BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492315
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25190.2 | Symbols: QWRF7 | Family of unknown function (DUF5... 1820 0.0
> AT4G25190.2 | Symbols: QWRF7 | Family of unknown function (DUF566)
| chr4:12914183-12916075 REVERSE LENGTH=1479
Length=1479
Score = 1820 bits (985), Expect = 0.0
Identities = 1209/1315 (92%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 1 TCATATAGTTAATCGTCGTCAAATATTAAAGAAGAAAATGGCAACCACCAAAACCACCGG 60
|||||||||||| |||||||| ||||||||||||||||||| | |||||||||
Sbjct 38 TCATATAGTTAACCGTCGTCATATATTAAAGAAGAAAATGG-------C--AACCACCGG 88
Query 61 TCGGAGACTCCGTCCTCCGTCGCCCAATATTAACCGGAGCCGGACTATAAGCTCTTCGAT 120
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 89 TCGGAGACTCCGTCCTCCATCGCCCAATAATAACCGGAGCCGGACTATAAGCTCTTCAAT 148
Query 121 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCCTCCTCTTCCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 149 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCATCTTCTTCCTC 208
Query 181 TTCGCCATCCAATTCAAGCAAGA-GAGTGATGATAACCAGATCACACTCTACAACGAGAT 239
|||||| |||||||||||||| | |||||||||||||||||||||| || ||||| ||||
Sbjct 209 TTCGCCTTCCAATTCAAGCAA-ACGAGTGATGATAACCAGATCACAGTCCACAACAAGAT 267
Query 240 CATCCAGGCCCACCGGATCATCCAACCCCAAATCCGGCGAAAATATAATCCCGGCGAGAA 299
| ||||| |||| |||||||||| || | ||||||||||| || ||||||||||||||||
Sbjct 268 CCTCCAGACCCATCGGATCATCCGACTCTAAATCCGGCGAGAACATAATCCCGGCGAGAA 327
Query 300 ACAGCGCGTCAAGATCTCACGAGATAAACAACGGTAGAAGCAGAGAGGCGTTTGCTCAGT 359
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||
Sbjct 328 ACAGCGCATCAAGATCTCAAGAGATAAACAACGGTAGAAGCAGAGAGTCGTTTGCTCGGT 387
Query 360 ACTTAGATCAACGTGA-GCGTGGTAGTCCTCGTAATAACGCTTCATCTAGAGGGGTAAAA 418
|||| || |||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 388 ACTTGGAGCAACGT-ACGCGTGGTAGTCCTCGTAGTAACGCTTCATCGAGAGGGGTAAAG 446
Query 419 CCGGGAGCGAGCTCACCATCGGCGTGGGCGTTGTCCT-CAGGGAGAGTTTCGACGATGAA 477
|||||||| ||||||||||||||||||||||||| || | || ||| ||||||| |||||
Sbjct 447 CCGGGAGCCAGCTCACCATCGGCGTGGGCGTTGT-CTCCTGGAAGACTTTCGACTATGAA 505
Query 478 GACATATCTGTCCAGCTCAGCTCCGGCGAATTCAATGTGCATGACGCCGCCTGAATCACC 537
||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 506 GACGCCTCTGTCCAGCTCAGCTCCGACGACTTCAATGTGCATGACGCCGCCTGAGTCACC 565
Query 538 GGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCTGTGGCCGGAGTTTTGAAGTA 597
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 566 CGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCGGTGGCAGGAGTTTTGAAGTA 625
Query 598 CTTCATGGCGCAGAAGAAAGTATCTCCGGTCCAAGAGGAGGATTATCACCGGTTTAGGGT 657
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 626 CTTCATGGCGCAGAAGAAAGTATCTCCGGTACAAGAGGAGGATTATCACCGGTTTAGGAT 685
Query 658 TTTGCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 717
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTTTCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 745
Query 718 TAAAC-TTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTAAGGATATACAAAA 776
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 746 -AAACCTTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTTAGGATATACAAAA 804
Query 777 TGAGGAACTACGTAGTGGAAAATTTGATTGAAGTTCAAAGGCTCCGTCAAGAAATCAAAC 836
||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 805 TGAGGAACTACGTTGTAGAAAATTTGATTGAAATTCAAAGGCTCCGTCAAGATATCAAAG 864
Query 837 TAGGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGATTGGTCAAAATTAGAAGCAA 896
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 865 TACGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGAGTGGTCAAAAATAGACGCAA 924
Query 897 AAAACTCCGAAGCATTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGTTTAC 956
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 925 AAAACTCCGAAGCGTTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGATTAC 984
Query 957 CCTTCGTACATGGTGCCACGATGGATGTGGTGTCGATACATGAAGAAATGGTCATAGCTA 1016
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 985 CCCTCGTACATGGTGCCACGATAGATATGGTGTCGATACATGAAGAAATGGTCATAGCTA 1044
Query 1017 TACAAGTCATGGACGAGATCGAAGACGTCATTATCAAGTTTCTCCCACGACAGGTTGAAA 1076
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1045 TAGAAGTCATGGACGAGATCGAAGACGTCATCATCAAGTTTCTCCCACGACAGGTTGAAA 1104
Query 1077 TAATCCTATATGAGCTGACAGAATTGATCGGCTTGTTTAATCAAGAATTGTTATATTTTG 1136
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1105 TAATCCTCTATGAGCTGACAGAATTGATCGGCATGTTCAATCAAGAATTGTTATATTTTG 1164
Query 1137 AAGAAATGGACAAGAGTCTTTTCTCCATTCCTCTCTTTGCGGCGAAGGAGAGGAGTTTGA 1196
||||||||||| |||| ||||| |||||||||||||| |||| |||||||| || ||||
Sbjct 1165 AAGAAATGGACGAGAGCCTTTTATCCATTCCTCTCTTCACGGCAAAGGAGAGTAGCTTGA 1224
Query 1197 AGGTCCATATTCTCCAGAAGAGTGAAGAACAGAGaaaaaaaaaGTTG-TATAATAACTCA 1255
||||||||||||||| |||| ||||||||||||| || ||| | ||||||||||
Sbjct 1225 GGGTCCATATTCTCCAAAAGACTGAAGAACAGAGATAAT----GTTTCTCTAATAACTCA 1280
Query 1256 AAAGTTAGGACATGTAATTAAA-TGTTAATAACATTGAACATTTTGCAAACTGGA 1309
|| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1281 AACGTTAGGACATGTAATTAAAATGTTAATCACATTGCACATTTTGCAAACTGGA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5