BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492316 Length=1093 Score E Sequences producing significant alignments: (Bits) Value AT4G25180.1 | Symbols: | RNA polymerase III RPC4 | chr4:129115... 1378 0.0 > AT4G25180.1 | Symbols: | RNA polymerase III RPC4 | chr4:12911550-12914014 REVERSE LENGTH=1239 Length=1239 Score = 1378 bits (746), Expect = 0.0 Identities = 977/1085 (90%), Gaps = 30/1085 (3%) Strand=Plus/Plus Query 28 AAGTCGAAGCGGAGGTTCCAGCCAAGA-CCTCCGAAGCCTTCTCTCCG---GCCGATTGC 83 ||||| |||||||||||||| |||| | ||||||| |||||||| ||| ||||| || Sbjct 126 AAGTCTAAGCGGAGGTTCCAACCAA-ATCCTCCGAGGCCTTCTCGCCGTCTTCCGATCGC 184 Query 84 TCCAACATCAAACACCGAAGCTGAGGCTGAGGAGGAAGAGAATAAAAAAGCAGCTCGACA 143 |||||| ||||||||||||||||| | ||||| |||||||||| ||||||| |||| || Sbjct 185 TCCAACCTCAAACACCGAAGCTGA-G--GAGGATGAAGAGAATATAAAAGCATCTCGCCA 241 Query 144 ATTAGCCAAACGTATCGGCACTGGCCAGAGGAGACCCAAAACCGAAACGAAAGCTTCTTC 203 ||| | || ||||||| | | || | |||||||||||||||||||||||||||||||| Sbjct 242 ATTTGACAGACGTATC-G-TC-GG-C--AGGAGACCCAAAACCGAAACGAAAGCTTCTTC 295 Query 204 TCCTGAAGTTGCATTCCAACCAAGCTTGTCGTCACTTGCAATAAGGTCGTTTAGTGTTCC 263 |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| Sbjct 296 TCCTGAAGTTGCATTCCAACCAAGCTTGTCACCACTTGCAATAAGGTCCTTTGGTGTTCC 355 Query 264 TAAAGAAGATGACAAGCCTAGTTCTGATG-TATATCCCTCTTCTTCTGCTGGTATTCTTC 322 |||||||||||||||||| | |||||||| || |||| |||||| ||||| ||||||||| Sbjct 356 TAAAGAAGATGACAAGCCCAATTCTGATGTTA-ATCCGTCTTCTCCTGCTAGTATTCTTC 414 Query 323 ATCCTGTTTCGTCTATTACT--T-CCCAAGAAGATGAAGAGGAGGTTCATAATTTGGTTA 379 | ||||||||||| ||||| | |||||||||||| ||| |||||||||||||| |||| Sbjct 415 CTGCTGTTTCGTCTGTTACTGCTGCCCAAGAAGATGGAGAAGAGGTTCATAATTTTGTTA 474 Query 380 CAAGACCTGGTGAAGACTACGTTGAACCTTGGGATTATAGAAACTCATACTATCCTACCG 439 ||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 475 CAAGAACTGGGGATGACTACGTTGAACCTTGGGATTATAGAAACTCCTACTATCCTACTG 534 Query 440 TTCTTCCTTTGAGAAAGCCTAACTCTGGTGACCCAGAACTTCTTGACCAGGAGGAATTTG 499 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 535 TTCTTCCTTTGAGAAAGCCTAACTCTGGTGATATAGAACTTCTTGACCAGGAGGAATTTG 594 Query 500 GGGAAGTGGCTAAACACCGTGATTATGAGGAGAACACCATCAACTCAGCAGAAGAACTCG 559 |||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 595 GGGAGGTGGCTAAAAACCGTGATTATGATGAGAACACCATCAACTCCGCAGAAGAACTCG 654 Query 560 GTCTGACATCGGTGCAACACTGCAAAAAACAGATGTTTTTCTTTAAGATCCCGGACTGTC 619 |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| Sbjct 655 GTCTGACATCGGTGCAACACAGCAAAAAACAGATGTTTATCTTTAAGATCCCAGACTGTC 714 Query 620 TCCCTGTAATGAAGCAATCGACAGGAGCAACCACCAAGAGATCAGTACGGGAGTATAGTT 679 |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 715 TCCCTGTAGTGAAGCAAACGACAGGAGCAACCACCAAGAGATCGGTACGGGAGTATAGTT 774 Query 680 CAGGGAGAAGCAACCCTTTTGAAGGTTTACCAGAGGGATTCATGGGCAAAATGCTGGTTT 739 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 CAGGGATAAGCAACCCTTTTGAAGGTTTACCAGAGGGATTCATGGGCAAAATGCTGGTTT 834 Query 740 ACAAGAGCGGTGCTGTCAAGTTGAAACTTGGAGATGTCCTCTTTGATGTTTTACCAGGTC 799 |||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||| Sbjct 835 ACAAGAGCGGTGCTGTCAAGTTGAAAGTTGGAGATGCCCTCTTTGATGTCTCGCCAGGTC 894 Query 800 CAAATGCAAAATTCCATAATGACGTGGCAGCAATCGACACCAAAGGGAGGAACTGCTGTC 859 || | ||||| ||| |||||| |||| |||||| |||| |||||||||||||||| ||| Sbjct 895 CAGGTACAAAAATCCCTAATGATGTGGTAGCAATAGACATCAAAGGGAGGAACTGCAGTC 954 Query 860 GCATTGGTTCTTCAGCCAAGTTTGTGACTGTTACTCCCGATGTTGAGGCTCTTTTGAACT 919 |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| Sbjct 955 GCATTGGTTCTTCAGCGAAGTTTGTTACTGTTACTCCCGATGTTGAGTCTCTTTTGAACC 1014 Query 920 CTGCTTCAGACATGGAAACACACAAGTGAAGGTTGTTCTGGATATAGCCGGTCTTGTTCA 979 |||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||| Sbjct 1015 CTGCTTCAGACATGGAAACACAGAAGTGAAGGTTGCTCTGGAAATAGCCGGTCCTGTTCA 1074 Query 980 TACAAGGATGTGAAAA-GCGTAGTATTGACCACTTAGATTCTGTAACTACAACCTAATCT 1038 |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1075 TACAAGGATGTGAAAAAGCGTAGTATTGACCACTTAGATTCTGTATCTACAAACTAATCT 1134 Query 1039 TCAGCCATGATCGTAAAAA--CTCTTCTTG--T--T-G-T--CTTCTTCTGTAGTAAGAG 1088 ||| | ||||||||||||| ||||||||| | | | | |||||| |||| |||||| Sbjct 1135 TCAACTATGATCGTAAAAAAACTCTTCTTGCCTCCTTGGTGTCTTCTTTTGTAATAAGAG 1194 Query 1089 ATTCA 1093 ||||| Sbjct 1195 ATTCA 1199 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53563981515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5