BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492318
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25160.1 | Symbols: | U-box domain-containing protein kinas... 4047 0.0
> AT4G25160.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr4:12903191-12907338 REVERSE LENGTH=2832
Length=2832
Score = 4047 bits (2191), Expect = 0.0
Identities = 2479/2619 (95%), Gaps = 16/2619 (1%)
Strand=Plus/Plus
Query 24 ATGGAAGCTTCCACCATTTCTTC-ATCAATTTCTGTCTTGGGTTTGACTTAAAGTTGCCT 82
||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||| || |
Sbjct 50 ATGGAAGCTTCCACCATTTCTTCTCTCAATTTTTGTATTGGGTTTGAC-TAAAGTCGCAT 108
Query 83 CCTTTAATAACCA-GGT-AGGT-TCAACAAGAAGaaaaaaaGAGAAACAATGAGTAGATC 139
|||||| | |||| ||| | | |||||||| | |||||| |||||||||||||||
Sbjct 109 CCTTTATTTACCAGGGTCA-ATAGAAACAAGAA-CACAAAAGATTAACAATGAGTAGATC 166
Query 140 ACCAGTCAATCTTGCCCTtcctcctcctcctcctcctccCCCATCTCGTACCGTCGTTGT 199
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 ACCAGACAAGCTTGCTCTTCCTCCTCCTCCTCCTCCTCCCCCATCTCGTACCGTCGTTGT 226
Query 200 GGCTCTAAGTGGGAGCAGTAAAAGCAAATATGTAGTTACATGGGCGCTCGAAAAATTTGC 259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 227 GGCTCTAAGTGGGAGCAGTAAAAGCAAATATGTAGTTACATGGGCGATCGAAAAATTTGC 286
Query 260 TCCTGAAGGAAATGTTGGCTTCAAGCTACTTCACATCCATCCAATGATTACTTCTGTACC 319
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 287 TACTGAAGGAAATGTTGGCTTCAAGCTGCTTCACATCCATCCAATGATTACTTCTGTACC 346
Query 320 TACACCAATGGGAAATGCAATCCCGATTTCCGAGGTAAGAGATGATGTAGTAACTGCGTA 379
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 347 TACACCAATGGGAAATGCAATCCCGATTTCCGAGGTACGAGATGATGTAGTAACTGCATA 406
Query 380 TAGACAGGAAATACTGTGGCAGTCTGAAGAAATGCTTAAACCTTTCACAAAATTGTTTGT 439
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 407 TAGACAGGAAATACTGTGGCAGTCTGAAGAAATGCTTAAACCTTACACAAAACTGTTCGT 466
Query 440 GCGGAAAAAGGTTGCAGTAGAAGTTCTTGTGATCGAATCAGATAATCTGGCAGCCGCAAT 499
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 467 GCGGAGAAAGGTTGCAGTAGAAGTTCTTGTGATCGAATCAGATAATGTGGCAGCCGCAAT 526
Query 500 AGCTGAAGAAGTGACTCGGGATTCAATAGACAGAATTGTCATTGGAGGCTCATCCCGTAG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AGCTGAAGAAGTGACTCGGGATTCAATAGACAGAATTGTCATTGGAGGCTCATCCCGTAG 586
Query 560 TTTTTTCTCAAGGAAAGCTGATATGTGCTCGGCGATATCAGCTTTGATGCCGAACTTTTG 619
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 587 TTTTTTCTCAAGGAAAGCTGATATTTGCTCGGTGATATCAGCTTTGATGCCAAACTTTTG 646
Query 620 TACAGTCTATGTTGTTTCAAAAGGAAAATTGTCATGCGTCCGACCATCAGACTCAGACGG 679
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 647 TACAGTCTATGTTGTTTCAAAAGGTAAATTGTCATGCGTCCGACCATCAGACTCAGACGG 706
Query 680 AAATGCTACTATAAGAGATGATGGTAGTGAGAGAACTAATTCTTCAAGCGGTTCTTCTGG 739
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 707 AAATGCTACTATAAGAGAAGATGGTAGTGAGAGAACAAATTCTTCAAGCGGTTCTTCTGG 766
Query 740 TCCCA---C-----C-TCAGATGTAATGTCAAGTGTGCATGACTCTCAATCTCGTGCTCT 790
||||| | | ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 767 TCCCACCTCAGATTCATCAGATGTAATGTCAAGTGCGCATGACTCTCAATCTCGTCCTCT 826
Query 791 ATCCCTTCCGGTCAGGAGAATGCAAAATTTCCCTACAATTGCAAGACAAGCATCAGTTCC 850
||||||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||
Sbjct 827 ATCCCTTCCGGTCAGGAGAATGCAACATTTCCCTGCAATTGCAGGACAGGCATCAGTTCC 886
Query 851 AATGGAAACGAGTTCTGTTGGCTCGGATGAAACCAGGTGCATGTCTTTGGATGCAGAGGA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AATGGAAACGAGTTCTGTTGGCTCGGATGAAACCAGGTGCATGTCTTTGGATGCAGAGGA 946
Query 911 AGCTAGAGATGTTTCAAGTATCAATAGAAGCAGCACGGATACTACATCACGTTGGACTCC 970
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 947 AGCTAGAGATGTTTCAAGTATCAATAGAAGCAGCACAGATACTACATCACGTTGGACTCC 1006
Query 971 TCGGCTTAGAGATTACGAGGAGAGAAAAGAAGCTATGAGTTCTTCTTCTAGCAACCGTGA 1030
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1007 TCGGCGTAGAGATTATGAGGAGAGAAAAGAAGCTATGAGTTCTTCTTCGAGCAACCGTGA 1066
Query 1031 ATACGGGAATATTGGTAGTAGATTTAGTTGGACTGGCATGGGGGTCGATACTACGCACTC 1090
|||||||||| |||||| ||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct 1067 ATACGGGAATTTTGGTACTAGGTTTAGTTGGAGTGGCATGGGTGTCGATACTACACACTC 1126
Query 1091 TCGGGCTTCTCAACAAGCTTCCAACATGTCTGATGCTCTAAGTGAACAATCTTATACAGA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1127 TCGGGCTTCTCAACAAGCTTCCAACATGTCTGATGCTCTAAGTGAACAATCCTATACAGA 1186
Query 1151 CAGCCAGGTAAACCTAAACTTTGAGGTTGAGAAGTTGAGAGCTGAGCTTAGACACGTTCA 1210
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CAACCAGGTAAACCTAAACTTTGAGGTTGAGAAGTTGAGAGCTGAGCTTAGACACGTTCA 1246
Query 1211 AGAAATGTATGCTATGGCTCAAACCGAAACCTTTGATGCTTCTCGAAAGCTTGGTGAGCT 1270
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1247 AGAAATGTATGCTGTGGCTCAAACCGAAACCTTTGATGCTTCTCGAAAGCTTGGTGAACT 1306
Query 1271 TAACCAACGTCGGTTAGAAGAAGCCATAAAGCTTGAAGAGCTAAAACTGAAGGAGTACGA 1330
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1307 TAACCAACGTCGGTTAGAAGAAGCCATAAAGCTTGAAGAGCTAAAGCTGAAGGAGTATGA 1366
Query 1331 AGCTCGGGAGTTAGCAGAAAGGGAAAAGCAGAATGTTgagaaggcgaggagagatgcaga 1390
|||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 1367 AGCTCGAGAGTTAGCAGAAAAGGAAAAGCAGAATTTTGAGAAGGCAAGGAGAGATGCAGA 1426
Query 1391 gaacatgagagaaagagcggagagagaaattgcgcagagaagagaagccgagagGAAATC 1450
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1427 GAGCATGAGAGAAAGAGCAGAGAGAGAAATTGCGCAGAGAAGAGAAGCCGAAAGGAAATC 1486
Query 1451 CGCACGTGATACTAAAGAGAAAGAGAAGCTCGAGGGCACTCTCGGATCTCCTCAGCTTCA 1510
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1487 CGCACGTGATACTAAAGAGAAAGAGAAGCTCGAGGGCACTCTCGGGTCTCCTCAGCTGCA 1546
Query 1511 ATATCAGCACTTCGCTTGGGAAGAAATTATAGCTGCCACTTCATCATTCTCAGAAGAGCT 1570
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1547 ATATCAGCACTTTGCTTGGGAAGAAATTATGGCTGCCACTTCATCATTCTCAGAAGAACT 1606
Query 1571 GAAGATCGGAATGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATACAACTGC 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GAAGATCGGAATGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATACAACTGC 1666
Query 1631 AGCTGTCAAAGTTTTGCATTCCGCTGAAAGTCGGCTATCCAAACAATTCCAACAAGAGCT 1690
|| ||||||||||||||| || ||||||| || || |||||||||||||||||||||||
Sbjct 1667 AGTTGTCAAAGTTTTGCAGTCAGCTGAAAATCAACTTTCCAAACAATTCCAACAAGAGCT 1726
Query 1691 CGAAATCTTTAGCAAGATTCGGCACCCACACTTGGTTCTCCTTCTAGGAGCGTGCCCGGA 1750
||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1727 CGAAATCTTGAGCAAGATTAGGCATCCACATTTGGTTCTCCTTCTAGGAGCGTGCCCGGA 1786
Query 1751 GCAAGGAGCTTTAGTTTATGAATATATGGAAAACGGTAGCTTGGAGGATAGACTGTTCCA 1810
|||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 1787 GCAAGGTGCTTTAGTTTATGAGTACATGGAAAACGGTAGCTTGGAGGACAGACTTTTCCA 1846
Query 1811 GGTCAACAACAGTCCGCCACTCCCGTGGTTTGAGAGGTTTAGGATAGCTTGGGAAGTCGC 1870
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1847 GGTCAACAACAGTCCGCCACTCCCGTGGTTTGAGCGGTTTAGGATTGCTTGGGAAGTTGC 1906
Query 1871 AGCAGCTCTTGTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCGTGATCTTAA 1930
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AGCGGCTCTTGTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCGTGATCTTAA 1966
Query 1931 ACCTGCAAACATCTTACTTGATCAAAACTTTGTCAGCAAAGTTGGAGATGTCGGACTTTC 1990
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 1967 ACCTGCAAACATCTTACTTGATCACAACTTTGTCAGCAAAGTTGGAGACGTGGGACTCTC 2026
Query 1991 AACGATGGTTCAAGTCGATCTTTTATCAACTAAATTCACTATATACAAACAAACAAGCCC 2050
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 2027 AACGATGGTTCAAGTCGATCCTCTATCAACTAAATTCACTATATACAAACAAACAAGCCC 2086
Query 2051 CGTGGGAACATTATGCTATATTGATCCGGAATATCAACGTACTGGAATGATATCATCGAA 2110
||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 2087 CGTGGGAACGTTATGCTATATTGATCCGGAATATCAGCGCACTGGAAGGATATCATCGAA 2146
Query 2111 ATCAGATGTCTATTCCTTTGGAATGATTGTTCTTCAGCTTCTCACGGCAAAACCTGCTAT 2170
||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2147 ATCAGATATCTACTCCTTTGGAATGATTCTTCTTCAGCTTCTCACAGCAAAACCTGCTAT 2206
Query 2171 TGCATTGACACATTTCGTTGAGAGCGCAATGGATAGTAATGATGAGTTCCTCAAGATCTT 2230
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2207 TGCATTGACACATTTCGTTGAGAGCGCAATGGATAGTAATGATGAGTTCCTTAAGATCTT 2266
Query 2231 AGATCAGAAAGCGGGTAACTGGCCGATTGAAGAAACCCGGGAATTGACCGCATTAGCTTT 2290
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2267 AGATCAGAAAGCCGGTAACTGGCCGATTGAAGAAACCCGGGAATTGGCCGCATTAGCTTT 2326
Query 2291 GTGTTGTACAGAGCTACGCGGGAAAGATAGGCCTGATTTAAAAAACCAGATTCTTCCGGC 2350
|||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||
Sbjct 2327 GTGTTGTACAGAGCTACGCGGGAAAGATAGACCTGATTTGAAAGATCAGATTCTTCCAGC 2386
Query 2351 GCTAGAAAACCTGAAGAAAGTAGCTGAAAAGGCAAGGAACTCACTTTCGGGCGTATCGAC 2410
||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2387 GCTCGAAAACCTAAAGAAAGTAGCTGAAAAGGCAAGGAACTCATTTTCCGGCGTATCGAC 2446
Query 2411 ACAGCCTCCCACTCATTTCATCTGCCCATTACTAAAGGACGTGATGAACGAGCCGTGCGT 2470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2447 ACAGCCTCCCACTCATTTCATCTGCCCATTACTTAAGGACGTGATGAACGAGCCGTGCGT 2506
Query 2471 TGCAGCTGACGGATACACATATGACCGTGGTGCGATAGAGGAGTGGCTTGAGGAGCACGA 2530
|||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| |
Sbjct 2507 TGCAGCAGACGGATACACATACGACCGTCATGCGATAGAGGAGTGGCTTAAGGAGCACAA 2566
Query 2531 CACATCGCCGATGACGGATTCACCGTTGCATAGCAAGAACCTATTGCCAAATTATACTCT 2590
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 2567 CACATCGCCGATGACGGATTCACCGTTGCATAGCAAGAACCTTTTACCCAATTATACTCT 2626
Query 2591 TTACACAGCTATCATGGAATGGAGGTCTACACGATAGTA 2629
||||||||| |||||||||||||||||||||||||||||
Sbjct 2627 TTACACAGCCATCATGGAATGGAGGTCTACACGATAGTA 2665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130534385686
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5