BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492319
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25140.1 | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900430-... 1107 0.0
> AT4G25140.1 | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900430-12901577
FORWARD LENGTH=908
Length=908
Score = 1107 bits (599), Expect = 0.0
Identities = 691/735 (94%), Gaps = 7/735 (1%)
Strand=Plus/Plus
Query 1 ATATACACATCCTTTTGATCATTCTCTCTCATTCAAGATCTCATTCTCTCTATTCAACAA 60
||||||||||| ||||||||| |||||||||||| ||||||||||||||| | |||||
Sbjct 1 ATATACACATCTTTTTGATCA--ATCTCTCATTCAAAATCTCATTCTCTCTAGTAAACAA 58
Query 61 GAAC-AAAAAATGGCGGATACAGGTAGAACAACCCATCACGATATCATAGGCAGAGACCA 119
|||| |||||||||||||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 59 GAACAAAAAAATGGCGGATACAGCTAGAGGAACCCATCACGATATCATCGGCAGAGACCA 118
Query 120 GTACCCGATGATTGGCCGAGACCGAGACCAATATCAGATGTCCGGACGAGGGTCCGACTA 179
|||||||||||| ||||||||||||||||| || ||||||||||||||||| || |||||
Sbjct 119 GTACCCGATGATGGGCCGAGACCGAGACCAGTACCAGATGTCCGGACGAGGATCTGACTA 178
Query 180 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCTACTGCTGTCACAGCTGGTGGTTCTCTCCT 239
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 179 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCAACTGCTGTCACAGCTGGTGGTTCCCTCCT 238
Query 240 TGTCCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTTCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 298
Query 300 GCTCGTTATTTTCAGCCCAATCCTTGTCCCGGCTCTCATCACCGTTGCACTGCTCATCAC 359
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 299 GCTCGTTATCTTCAGCCCAATCCTTGTCCCGGCTCTCATCACAGTTGCACTCCTCATCAC 358
Query 360 CGGTTTTCTCTCCTCTGGTGGGTTTGGCATTGCAGCTATAACCGTTTTCTCTTGGATTTA 419
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 CGGTTTTCTTTCCTCTGGAGGGTTTGGCATTGCCGCTATAACCGTTTTCTCTTGGATTTA 418
Query 420 CAAGTACGCAACCGGAGAGCACCCACAGGGATCAGATAGGTTGGACAGTGCAAGGATGAA 479
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 419 CAAGTACGCAACGGGAGAGCACCCACAGGGATCAGACAAGTTGGACAGTGCAAGGATGAA 478
Query 480 GTTGGGAAGCAAGGCTCAGGATCTAAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 539
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 GTTGGGAAGCAAAGCTCAGGATCTGAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 538
Query 540 TGGTGGGGAACATGACCGTGACCGTACTCGTGTTGGCCAGCACACTACTTAAATTTCCCG 599
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 539 TGGTGGGGAACATGACCGTGACCGTACTCGTGGTGGCCAGCACACTACTTAAGTTACCCC 598
Query 600 G--G-TGTCATCATCATAGTCCAATAACTCCGATGTCGGGGAGTTAGTTTATGAGGAATA 656
| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 ACTGATGTCATCGTCATAGTCCAATAACTCCAATGTCGGGGAGTTAGTTTATGAGGAATA 658
Query 657 AAGTGTTTAGAATTTGATCAGGGG-AGATAATAAAAGCCGATTTTTAATCTTTTTGTTAT 715
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 659 AAGTGTTTAGAATTTGATCAGGGGGAGATAATAAAAGCCGAGTTTGAATCTTTTTGTTAT 718
Query 716 AAGTAATGTTTATGt 730
|||||||||||||||
Sbjct 719 AAGTAATGTTTATGT 733
Score = 130 bits (70), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 737 ttGTACTTTCTTTGGCTTCTTTGTAAG-TGGTAACGTTGGTCTATATATGGAAAAGGTCT 795
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 803 TTGTACTTTATTTGGCTTCTTTGTAAGTTGGTAACGGTGGTCTATATATGGAAAAGGTCT 862
Query 796 TGTTTTGTTAAACTAATGATAGTTAA 821
|||||||||||||| ||| |||||||
Sbjct 863 TGTTTTGTTAAACTTATGTTAGTTAA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5