BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492320
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase ... 1435 0.0
> AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase
4 | chr4:12898591-12900064 REVERSE LENGTH=1054
Length=1054
Score = 1435 bits (777), Expect = 0.0
Identities = 946/1026 (92%), Gaps = 18/1026 (2%)
Strand=Plus/Plus
Query 1 AAAGTTCCTAATTTCACCACGTCACTGCTTTGATAATGCAGGTCATCGTCGCctctcctc 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 32 AAAGTTCCAAATTTCACCACGTCACTGCTTTGATAATGCAGGTCCTCGTCGTCTCTCCTC 91
Query 61 cgctcatctccgccgcttctctctctaaacctttccattctctctctaaggccgcactct 120
|||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 92 CGCTCATCGCCGCCGCATCTCTCTCTAAACCTCTCAATTCTCTCTCTAAAGCCGCACTCT 151
Query 121 ctttctctAGAGCCAAACCCATTTGCCCTTTCCCCCAAA-C-CTC-ACGACCCATCTCCG 177
||||||| ||||||||||||||||| |||||||| |||| | ||| |||||| |||||||
Sbjct 152 CTTTCTCCAGAGCCAAACCCATTTGTCCTTTCCCTCAAACCTCTCGACGACCAATCTCCG 211
Query 178 TCTACAAATCCCCGATGAACAACCTCTTCAACAGGCTCGGTTTCGGGTCTCGTCCCCAAG 237
| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 212 TATACAAATCCCCAATGAACAACCTTTTCAACAGACTCGGATTCGGGTCTCGTCCTCAAG 271
Query 238 CTCAAGTC-GACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGACGATGTTCCGTCG 296
| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 272 CCCAAG-CTGACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGATGATGTTCCGTCT 330
Query 297 CCAGGTCAGCAATTCGCGCAATTCGGCGCCGGTTGCTTCTGGGGAGTGGAGCTAGCTTAC 356
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 331 TCAGGTCAGCAATTCGCGCAATTTGGCGCCGGTTGTTTCTGGGGAGTGGAGCTAGCTTAC 390
Query 357 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCCTCATGCACAAT 416
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 391 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCATCGTGCACAAT 450
Query 417 CCGAGTTACGAAGATGTCTGTACTGGCACGACGGGACACAACGAGGTTGTTAGAGTTCAG 476
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 451 CCGAGTTACGAGGATGTCTGTACTGGCACTACGGGACATAACGAGGTTGTTAGAGTTCAG 510
Query 477 TACGATCCTAAAGAGTGTAGCTTTGAGAGCTTGCTCGATGTTTTCTGGAATCGCCATGAT 536
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 511 TATGATCCCAAAGAGTGTAGCTTTGAGAGCTTGCTTGATGTTTTCTGGAATCGTCATGAT 570
Query 537 CCAACCACCTTGAATCGTCAGGG-GGGCGATGTGGGAACTCAGTATCGATCAGGCATATA 595
||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct 571 CCAACCACCTTGAATCGTCAGGGTGGG-GATGTGGGAACGCAGTATCGATCAGGTATATA 629
Query 596 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCCGTTGAGAAACAGCAGAAGAT 655
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 630 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCTGTTGAGAAACAGCAGAAGAT 689
Query 656 ATTGAACAAGAAGATTGTGACAGAGATACTTCCCGCGACAAAATTCTACAGAGCAGAAAA 715
||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 690 ATTGAACAAGAGGATTGTCACAGAGATACTTCCCGCTACGAAATTCTACAGAGCAGAAAA 749
Query 716 TTACCACCAGCAATACCTGGCAAAAGGCGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 750 TTACCACCAGCAATACCTGGCAAAAGGGGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 809
Query 776 AGGTTGCAAGGATCCAATCCGATGTTACGGCTAAGAAAATAAGTCAGTCTTCCCTCAAGC 835
|||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 810 AGGTTGCAAGGATCCAATCCGATGCTATGGCTAAGAAACTAAGTCAGTCTTCCCTCAAGC 869
Query 836 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTGT 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 870 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTTT 929
Query 896 CTGGTCTTTGTTATGTAACCATTGGTAATGATGCGTCATATGCTTGCTTATAAATTT-GT 954
|| |||||||||||| ||||| |||| ||||||| || ||||||| | || ||| |
Sbjct 930 CTTGTCTTTGTTATGCAACCAATGGTTATGATGCATCCTATGCTTA-T-ATGAATCAAG- 986
Query 955 G-TTT--CAAAAACAACCAT-AAGTTTGGTACTACAGTACTGGTCCATACAATTTGGGAA 1010
| ||| | ||| ||| | || |||| ||||||||||||||| ||||||||||||||
Sbjct 987 GCTTTGTCCAAATCAATT-TCAA-TTTGATACTACAGTACTGGTA-ATACAATTTGGGAA 1043
Query 1011 GTCCTC 1016
|| |||
Sbjct 1044 GTTCTC 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5