BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492323
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:128875... 2069 0.0
> AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:12887518-12890262
REVERSE LENGTH=1786
Length=1786
Score = 2069 bits (1120), Expect = 0.0
Identities = 1365/1477 (92%), Gaps = 41/1477 (3%)
Strand=Plus/Plus
Query 244 AAAAGAATGCTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTCCCTCCC 303
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 304 AAAATAATGTTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTTCCTCCC 363
Query 304 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCTCCCGATCCC 363
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 364 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCCCCCGAGCCC 423
Query 364 CGTCTCCAATCCCACGCTTCGGCCAGCCCTTTTCCTTTCCCAAACTCATCTCCCGTAACT 423
||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| |||
Sbjct 424 CGTCTCCAATCTCACGCGTCGGCGAGCCCTTTTCCTTTCCCCAACTCATCT-CCG----- 477
Query 424 CCAGCACCATCCGCTTCCACCTACCCGCCGCCATCACCGTCTCCGTTCACTCACGCGCCG 483
|| |||||| ||| || ||||||||||||| |||| ||||||| |||||||||||||
Sbjct 478 ---GCTCCATCCACTTTCATCTACCCGCCGCCAACACCTTCTCCGTACACTCACGCGCCG 534
Query 484 CCTGCACCGTCTCCATTCAACCACGCGCCTCCAGA-ACATTATCCGTTCACTCCCGCGCC 542
| ||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||
Sbjct 535 CATGCACCGTCTCCATTCAACCACGCGCCTCCAGATTC-TTACCCGTTCACTCACGCGCC 593
Query 543 GT-CAGCACCGTCTCCATTTAACCACGCGCCGCCGGGTCCTCCACCACCCGTACACGGAC 601
| ||||| |||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 594 -TCCAGCATCGTCTCCATTCAACCACGCGCCGCCGGGTCCTCCACCGCCGGTACATGGAC 652
Query 602 AGAAGCGAGCGGTGATCGTGGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 661
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGAAGCGAGCGGTGATAGTCGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 712
Query 662 GTATCAATGACGCAAAGTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 721
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTATCAATGACGCAAACTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 772
Query 722 CTTGCATTCTTATGCTCACCGAAGAAGAAACGGACCCAATGAGATGGCCAACGAAGAACA 781
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 773 CTTGCATTCTTATGCTCACCGAAGAAGAAGCGGACCCAATGAGATGGCCAACGAAGAACA 832
Query 782 ACATAACGATGGCGATGCATTGGCTAGTTGTAAGCTGCAAACCGGGAGATTCCCTCGTCT 841
||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 833 ACATAACAATGGCGATGCATTGGCTTGTTCTTAGCTGCAAACCGGGAGATTCCCTCGTCT 892
Query 842 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACTACAACGGCGACGAGGTTGACGGCT 901
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 893 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACGACAACGGCGACGAGGTTGACGGCT 952
Query 902 TCGACGAGACTCTTCTCCCGGTGGACTACATGACTTCAGGTGTCATCGTGGACGATGAGA 961
|||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 953 TCGATGAGACTCTTCTCCCGGTGGACCACAGGACTTCAGGTGTCATCGTGGACGATGAGA 1012
Query 962 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTCAAGCTCCATGCCATCGTCGACG 1021
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1013 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTTAAGCTCCATGCCATCGTCGACG 1072
Query 1022 CTTGTCATAGTGGTACCGTCATGGACTTGCCTTATCTTTGTAGAATGGATAGGCTCGGAA 1081
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1073 CTTGTCATAGTGGTACCGTCATGGACTTACCTTATCTTTGTAGAATGGACAGGCTCGGAA 1132
Query 1082 ACTATGAATGGGAGGACCATCGGCCTCCATCAGGAATGTGGAAAGGTACAAGTGGCGGTG 1141
||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 1133 ACTATGAATGGGAAGACCATCGGCCTAAAACAGGAATGTGGAAAGGTACGAGTGGCGGTG 1192
Query 1142 AAGTCTTCTCTTTCACGGGCTGCGATGATGACCAGACCTCAGCTGACACTCCGCAATTGT 1201
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1193 AAGTCTTCTCCTTCACAGGCTGCGATGATGACCAGACCTCGGCTGACACTCCGCAATTGT 1252
Query 1202 CAGGGAGTGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGCGGCC 1261
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1253 CAGGGAGCGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGTGGCC 1312
Query 1262 ACGGGACGACTTATGGGAGCTTACTGAATGCAATGAGATCAACGGTTCACGAGATTTTCG 1321
|||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1313 ACGGGATGACTTATGGGAGCTTGCTGAATGCAATGAGATCAACGGTTCATGAGATCTTCG 1372
Query 1322 ACAAAGACAAAGGTAGAGAGCTTGTGGAAGTGGAAGGCGCTGATCTTCTCACTACTCTTC 1381
||||| ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||
Sbjct 1373 ACAAAAACAAAGGTAGAGAGCTTGTGGAAGTGGGAGGTGCTGATTTTCTCTCTACTCTTC 1432
Query 1382 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCTTGATGAGGAAGAGGAGGTAAACCAAGCCC 1441
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1433 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCCTGATGAGGAAGAGGAAGTAAACCAAGCCC 1492
Query 1442 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGACGCATTTGATGTATATGAGAAGC 1501
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1493 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGAGGCATTTGCTGTATATGAGAAGC 1552
Query 1502 CCTTTTCTTTGTAATATCACCTTAAGAGGAGGACAAAAGAATGAGTATGaaa------a- 1554
|||| ||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct 1553 CCTTCTCTTTATAATATCACCTTAAGA--AG-ACAAAAGAATGAGTATGAAATTTCGGAG 1609
Query 1555 a--aaC---------TTTATTGAGCTTGGAGTGAAG--ATATAT--GGGGCATGATCATA 1599
| ||| ||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1610 ACCAACAAAAAAAACTTTATTGAGCTTGGAGTGAAGCTATATATATGGGGCAAGATCATA 1669
Query 1600 ATATGTTTATATCGGCCTTTTCATTAAGTGAAAATAAAAGTTATGAGAAATTTTATCAAA 1659
||||||||||||||||||||||||||| ||||||||| |||| |||||||| | ||||||
Sbjct 1670 ATATGTTTATATCGGCCTTTTCATTAACTGAAAATAATAGTTTTGAGAAATAT-ATCAAA 1728
Query 1660 TGGTAAACAGACATCATCTTT-AAAAATTGCCATCAA 1695
||||||||||||||||||||| |||||| |||||||
Sbjct 1729 TGGTAAACAGACATCATCTTTGAAAAATA-CCATCAA 1764
Score = 237 bits (128), Expect = 3e-61
Identities = 217/256 (85%), Gaps = 21/256 (8%)
Strand=Plus/Plus
Query 1 GAAGGAAGAATTATAATTCTCAACTTGCTAATTTAATTTGTGTCGTATACATTGTATATA 60
||||||| ||||||||||| |||||||||||||||| ||| | | |||||||||
Sbjct 4 GAAGGAACAATTATAATTCGCAACTTGCTAATTTAACTTG-G--G------TTGTATATA 54
Query 61 TGCCAGTTGAGACGACTT-GTTTGATCATCaaa-aaaaGTCTTGACGAATACATAAGCCT 118
||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 55 TGCAAGTTGAGACGACTTCATTTGATCATCAAACAAAAGTCTTGACGAATACATTAGCGG 114
Query 119 A-AAGTCGT---CTCTTAC-TCAGCATTTTCTT-CTTCACCTTATTGGCATCTTCTTCTA 172
| ||| | | || | | || |||||||| ||| |||||||||||||||||||||
Sbjct 115 ATAAG-CTTAAAGTCGT-CGAAAGAATTTTCTTCCTT-GCCTTATTGGCATCTTCTTCTA 171
Query 173 AAGTTCCAATGCTT-GATCATTGATGATTTTCCCAGCATCAGAACCGAAAGGCTATAATC 231
|||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 172 AAGTTCCAATGCTTTGATCATTGATGATTTTCCCAGCATCAGAAACTAAAGGCTATAATC 231
Query 232 TGCAACTTTCAAAAAA 247
|||||||||||| |||
Sbjct 232 TGCAACTTTCAAGAAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5