BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492328
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25080.3 | Symbols: CHLM | magnesium-protoporphyrin IX methy... 1676 0.0
> AT4G25080.3 | Symbols: CHLM | magnesium-protoporphyrin IX methyltransferase
| chr4:12876948-12878647 FORWARD LENGTH=1332
Length=1332
Score = 1676 bits (907), Expect = 0.0
Identities = 1057/1129 (94%), Gaps = 11/1129 (1%)
Strand=Plus/Plus
Query 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCACACTTTGTTTT-GCTTTCTCCTCTAC 59
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCTCACTTTGTTTTAGCTTTCTCCTCTAC 60
Query 60 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 120
Query 120 TCCCAGATTCCCCAACGCGACTAGGTTCAATGTAACTCCCCGGAGCAGAGCCGCCACCGT 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 121 TCCCAGATTCCCCAACGCGACTAGATTCAATGTAACTCCACGGAGCAGAGCCGCCACCGT 180
Query 180 CGTCGCGGCATCCGTCACCGACTTAGCCGGCGTAGACAGTACAACAATCGCCGTACTCGG 239
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 181 CGTCGCGGCATCCGTCACCGACCTAGCCGGGGTCGACAGTACAACAATCGCCGTACTCGG 240
Query 240 TGGCGGATCCGTTGCAGCACTCGCGGCGATGGTTTCCTTGACGGATCCGGAGAGGAGGCG 299
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TGGAGGATCCGTAGCAGCACTCGCGGCGATGGTTTCCTTAACGGATCCGGAGAGGAGGCG 300
Query 300 GAAATTGCAGGCGGAGGAAGTTGGAGGAGGCGATAAGGAGGTGGTGAGGGAGTATTTCAA 359
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 301 GAAATTGCAGGCGGAGGAAGTTGGCGGAGGCGATAAGGAGGTTGTGAGGGAGTATTTCAA 360
Query 360 CAGTACCGGTTTCGAGAGGTGGAGGAAGATCTACGGCGATACTGATGAAGTGAATCGCGT 419
|| || || |||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 361 TAGCACGGGGTTCGAGAGGTGGAGGAAGATCTACGGTGAGACTGATGAAGTGAATCGAGT 420
Query 420 ACAGAAGGATATTCGACTTGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTCAC 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 ACAGAAGGATATTCGACTCGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTGAC 480
Query 480 GGAAGATAGATCTTTGGCCGGCGTCACGGTCTGCGACGCCGGTTGCGGAACCGGTTTGCT 539
||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 481 TGAAGATAGATCCTTGGCCGGTGTCACGGTTTGCGACGCCGGTTGTGGAACCGGTTTGCT 540
Query 540 CTCGATTCCACTTGCTAAGGAAGGAGCAATAGTCTCTGCTTCCGATATCTCTGCTGCTAT 599
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 CTCGATTCCACTTGCTAAGGAAGGAGCAATCGTCTCTGCTTCCGATATTTCTGCTGCTAT 600
Query 600 GGTTGCCGAAGCTGAGATGAAGGCAAAGGCACAACTGCCACCAGAGAATTTACCAAAATT 659
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 601 GGTTGCTGAAGCTGAGATGAAGGCAAAGGCACAACTACCATCAGAGAATTTACCAAAATT 660
Query 660 TGAGGTGAATGATTTAGAGAGCCTAAGTGGGAAGTACGACACAGTGGTATGCCTCGACGT 719
||||||||||||||| |||||||||| ||||||||| || || || ||||| ||||||||
Sbjct 661 TGAGGTGAATGATTTGGAGAGCCTAACTGGGAAGTATGATACCGTTGTATGTCTCGACGT 720
Query 720 GCTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTCGCTTCTTTAGC 779
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 GTTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTTGCTTCTTTAGC 780
Query 780 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTACGATATCTTAAAGAG 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTATGATATCTTAAAGAG 840
Query 840 AATTGGAGAGCTTTTCCCAGGGCCATCAAAGGCTACACGGGCTTATCTACACTCGGAGGC 899
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 841 AATTGGAGAGCTTTTCCCAGGGCCATCAAAAGCTACAAGGGCGTATCTACACTCGGAGGC 900
Query 900 AGATGTGGAAAGAGCGTTGCGTAAGGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 959
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 901 GGATGTGGAAAGAGCGTTGGGTAAAGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 960
Query 960 CACACAGTTTTACTTCTCTAGGCTCATTGAAGCTGTTCCAATGTAGACCCATTTTAAAAC 1019
||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 961 CACACAGTTCTACTTCTCTAGGCTCATCGAAGCTGTTCCAATGTAGACCAATTTGAAAAC 1020
Query 1020 TAGATA-CATGTGAGGATGGTTAGCTTTCCTTTTGGGACTTTTGCAGTAGATCTCTCTCT 1078
|||| | || | | | |||||||||||| ||||| |||||||||||||||||||
Sbjct 1021 TAGAAATCAAATTTG-ACGGTTAGCTTTCCGTTTGGAACTTTTGCAGTAGATCTCT---- 1075
Query 1079 GTATAGCATATTAATTCGAAGAAGGATATTCGTTGAAGACATGCAGATT 1127
|||||||||||| ||| ||||||| ||||| |||||||||||||||
Sbjct 1076 GTATAGCATATTC---CGA-GAAGGATTTTCGTGGAAGACATGCAGATT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55270800045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5