BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492332
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25070.2 | Symbols: | unknown protein; EXPRESSED IN: cultur... 2627 0.0
> AT4G25070.2 | Symbols: | unknown protein; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). | chr4:12872482-12876734
FORWARD LENGTH=2570
Length=2570
Score = 2627 bits (1422), Expect = 0.0
Identities = 1693/1819 (93%), Gaps = 38/1819 (2%)
Strand=Plus/Plus
Query 491 ACGACGGTGATGAAATTATAGCCGATGTGCGCCGGATTCCAGTGGAGATTTCTGGAAGGA 550
||||| |||||||||||| || ||||| | ||||| ||||||||||| || || ||
Sbjct 563 ACGACAGTGATGAAATTACAGAGGATGTTCCCCGGAATCCAGTGGAGA-TT-AGG--GGT 618
Query 551 ATGCT-AGGGGTCGGAAAGAAGCTCCCACGGTGAAA-CC--AGTCGTTAATACGCCTAAA 606
| | | | | | |||| |||||| |||| ||| || ||||||| | || |||||
Sbjct 619 CCGGTCA-GAG--GAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAA 675
Query 607 TTTGACGATGAATACGACAGTGATGAAATTACAGCGGATGTTCCCCGGAATCCAGTGGAG 666
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 676 TTTGACGATGAATACGACAGTGATGAAATTACAGAGGATGTTCCCCGGAATCCAGTGGAG 735
Query 667 ATTA-GGGTCCCGGTCAGAGGGAAAGTAGCTCCGGCGGTGAAACCC---GTCGTTCTTCC 722
|||| |||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 736 ATTAGGGGTACC-GTCAGAGGAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCC 794
Query 723 GACTAGATTTGACGATGAATATGATAGTGATGAAATTACAGCCGAGGTGTCCCGGAATCC 782
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 795 GACTAAATTTGACGATGAATACGATAGTGATGAAATTACAGCCGATGTGTCCCGGAATCC 854
Query 783 AGTGGGGAGTAAAGG-TCCGGTCAGAGGGAAAG-TAGCTCCGGCGGTGAAACCCGTCGTT 840
||||| | || | || ||| ||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 855 AGTGGAG-GTTAGGGATCCAGTCAGAGGG-AAGTTAGCTCCGGTGGTGAAACCCGTCGTT 912
Query 841 CTTCCGACTAAATATGACGATGAACT-CGACAGTGACGAAATTGCGGCCGATGTGC-CTC 898
||||||||||||| |||||||||| | ||| |||||||||||||| || ||||| | | |
Sbjct 913 CTTCCGACTAAATTTGACGATGAA-TACGATAGTGACGAAATTGCAGCTGATGT-CTCCC 970
Query 899 GGAA-GCAAGTGGAGATTCCTCAAAAGAATGGAAAAG-GTGCACTCAGGGTTAGAGTTCC 956
|||| || |||||||||||||||||||||| |||||| || |||||||||||||||| ||
Sbjct 971 GGAAGGC-AGTGGAGATTCCTCAAAAGAAT-GAAAAGAGTACACTCAGGGTTAGAGTCCC 1028
Query 957 GGCATATTCACGTCGGAATCCGTTGGAGGAATTTGAGCAGAACGGAGAAGAAAAGCAAAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1029 GGCATATTCACGTCGGAATCCGTTGGAGGAATTTGAGCAGAACGGAGAAGACAAGCAAAA 1088
Query 1017 TGTTCAGTTTGATGTGCCTGCAAAACAATCGGAAGCTCAATTAAAGTATAAGAAAAGGTT 1076
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1089 TGTTCAATGTGATGTGCCTGCTAAACAATCGGAAGCTCAATTAAAGTATAAGAAAA-GTT 1147
Query 1077 TCA--T---A--CTGCAGATATTTTAGCACCTAATAACTCTAACCAGCAGGAAGATGATC 1129
||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TCAGGTACCATCCTGCAAATATTTTAGCACCTAATAACTCTAACCAGCAGGAAGATGATC 1207
Query 1130 GAGAAGCTTCAGCCCTGCGTGATGAATTAGATATGCTTCAAGAAGAAAACGATAATATTA 1189
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1208 GAGAAGCTTCAGCCCTGCGTGATGAATTAGACATGCTTCAAGAAGAAAACGATAATATAA 1267
Query 1190 TGGATAAACTTCAGCGCGCTGAAGAAAGACGCGAAGCTGCAGAAACAAGGGCTAAAGAGC 1249
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1268 TGGATAAGCTTCAGCGCGCTGAAGAAAGACGCGAAGCTGCAGAAGCAAGGGCTAAAGAGC 1327
Query 1250 TCGAGAAACAGATTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGA 1309
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TTGAGAAACAGGTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGA 1387
Query 1310 GGAAAGAAGCAGCACTGCGTCAAAGAGAGGCAGCATTAAGGGCTGCTGAACAGAAAAGAG 1369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GGAAAGAAGCAGCATTGCGTCAAAGAGAGGCAGCATTAAGGGCTGCTGAACAGAAAAGAG 1447
Query 1370 ATGGGATAAATAGAGAAAGTAATGCACTTAGTTCAGAATTTCAGAGTTTGAAAGATGAAG 1429
|||| | |||||| |||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1448 ATGGAAGAAATAGGGAAACTAATGCCCTTAGCTCAGAATTTCAGAGTTTAAAAGATGAAG 1507
Query 1430 CAGAGAAAGCCATGGAACAGCTCCAGGAGGTTGAAGCTGAAACAAAGTCTCTTCGGACAA 1489
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1508 CAGAGAAATCCACGGAACAGCTCCAGGAGGTTGAAGCTGAAATAAAGTCTCTTCGGACAA 1567
Query 1490 TGATACATAGAACGATTTTGACTCAAGAAGAAATGGAGGAAGTTGTTCTTAAGAGATGCT 1549
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1568 TGATACATAGAACGATTTTGAGTCAAGAAGAAATGGAGGAAGTTGTTCTAAAGAGATGCT 1627
Query 1550 GGCTTGCTCGATACTGGGAACTAGCTGTTCAACATGGAATATGTGAAGATATAGCCACAT 1609
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1628 GGCTTGCTCGCTACTGGGAATTAGCTGTTCAACATGGAATATGTGAAGATATATCCACAT 1687
Query 1610 CAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTG 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTG 1747
Query 1670 CCCAAAAGTCTGAAGACTCCTGGCAGACAGGTGGTAGCGATCGCACTTGGAGCAAAGTCG 1729
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 CCCAAAAGTCTGAAGATTCCTGGCAGACAGGTGGTAGCGATCGCACTTGGAGCAAAGTCA 1807
Query 1730 TCAGTAATTTCAGTGATGTGAATGGAGAAGGAAACATTGAGAGTATGCTTGCTGTTGAAA 1789
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1808 TCAGTAATTTCAGTGATTTGAATGGAGAAGGGAACATTGAGAGTATGCTTGCTGTTGAAA 1867
Query 1790 CGGGATTACGAGAGATAGCATCCTTGAAGGTTGAGGATGCTGTAATGCTTGCACTTGCCC 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1868 CGGGATTACGAGAGATAGCATCCTTGAAGGTTGAGGATGCTGTAATGCTTGCACTTTCCC 1927
Query 1850 GGTATAGACAAACAAATGTGGGC-CGACAAGCCATCACTGATCCCAGGGTGCAAGGGGAA 1908
|||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1928 GGTATAGACAGACAAATGT-GGCTCGACAAGCCGTCACTGATCCCAGGGTGCAAGGGGAA 1986
Query 1909 CCTAAGTTCTCTGAAACATTTGAGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAA 1968
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 CCTAAGTTCTCCGAAACATTTGAGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAA 2046
Query 1969 GAGGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATA 2028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 GAGGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATT 2106
Query 2029 GCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGAT 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 GCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGAT 2166
Query 2089 GCAATTGATGTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTG 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 GCAATTGATGTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTG 2226
Query 2149 TGGGAAACATCTCGTAAAGAACTCATAGACTCCTCTTTTCTTCCTTCTTATTCCGTTTCT 2208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2227 TGGGAAACATCTCGTAAAGAACTCATCGACTCCTCTTTTCTTCCTTCTTATTCCGTTTCT 2286
Query 2209 GACTACAATGACGAATAACCACCTCTAATGTCTTCTTTGCCTCCAATTTCCTACATTCAC 2268
|||||||||||||| | |||||||||| | || |||||||||||||||| || ||||||
Sbjct 2287 GACTACAATGACGAGTGACCACCTCTACTCTCCTCTTTGCCTCCAATTTTCTTTATTCAC 2346
Query 2269 TACACACGCTAACATAAAC 2287
||||||||| ||||||||
Sbjct 2347 GACACACGCTCACATAAAC 2365
Score = 1044 bits (565), Expect = 0.0
Identities = 788/889 (89%), Gaps = 41/889 (5%)
Strand=Plus/Plus
Query 37 ATGGCGAGGAGACCAGGAAGCTCGGCTTCTTCTTCACCCACGATGTCTCCGTCGCATATG 96
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1 ATGGCGCGGAGACCAGGAACCTCCGCTTCTTCTTCACCCACGATGTCTCCGTCTCATCGG 60
Query 97 ATGAACAGTGGCGGAGGAGGAATCTCCGGCAAAAGCACTCTCCGGAAGCAAAACGCCGCC 156
|||| | | ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 61 ATGAGCGGCGGCGGAGGAGGAATCTCCGGCAAAAGCACGCTCCGGAAACAAAACGCCGCC 120
Query 157 GAGCTGCTCGCGAAAGTCATGGAGAAGCGCGACTATGATTATGATTACGACGATGAAGAC 216
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GAGCTACTCGCGAAGGTCATGGAGAAGCGCGAATATGATTATGATTACGACGATGAAGAT 180
Query 217 GGAGGCGAAGATCTGTACCAGGTACATCTTCCGCCTCTTACTCAGTCTCGAGGACGAGAT 276
||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 181 GGAGGTGAAGATCTGTACCAGGTACATCTTCCTCCTCTTACTCAGTCTCGAAGACGAGAT 240
Query 277 GATAAGCGTATTGGTAAGGGTTCAGTCAACGAGAAAAAGGCTCCGGCGAAGAAACCGGTC 336
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GATAAGCGTATTGGTAAGGGCTCAGTCAACGAGAAAAAGGCTCCGGCGAAGAAACCGATC 300
Query 337 ATACTACCGCCGCCTAAATTTGACGATGAATCCGAAGATGATGAAATTAGAGCTGATGTT 396
||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||| || ||
Sbjct 301 ATACTTCCGGCGCCTAAATTTGATGATGAATCCGAAGATGATGAAACTAGAGCTAATTTT 360
Query 397 C-CCCGGAATCCAGTGATAGTTCCTAAAAAGAATGCTAGGGATCCGAGAAGAGCTCCGGC 455
| ||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 361 CGCCCA-AATCCAGTGATAATTCCTAAAAAGAATGCTAGGGAACCGAGAAAAGCTCCGGC 419
Query 456 GACGAAGCCGGTCGTACTTCCGCCGCCTAAATTTGACGACGGTGATGAAATTATAGCCGA 515
|||||| |||||||| |||||||| ||||||||| | | | | | |
Sbjct 420 GACGAAACCGGTCGTTCTTCCGCCACCTAAATTTT-C--C----A--A--T----G---- 460
Query 516 TGTGCGCCGGATTCCAGTGGAGATTTCTGGAAGGAATGCTAGGGGT-CGGAAAGAAGCTC 574
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 461 TG--CGCCGGATTCCAGTGGAGATTTCTGGAAGGAATGCTAGGGGTTCG-AAAGAAGCTT 517
Query 575 CCACGGTGAAACCAGTCGTTAATACGCCTAAATTTGACGATGAATACGACAGTGATGAAA 634
| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 518 CGACGGTGAAACAAGTCGTTAGTACGCCTAAATTTGACGATGAATACGACAGTGATGAAA 577
Query 635 TTACAGCGGATGTTCCCCGGAATCCAGTGGAGATTAGGG-TCCCGGTCAGAGGGAAAGTA 693
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 578 TTACAGAGGATGTTCCCCGGAATCCAGTGGAGATTAGGGGTCC-GGTCAGAGGAAAAGTA 636
Query 694 GCTCCGGCGGTGAAACCCGT---CGTTCTTCCGACTAGATTTGACGATGAATATGATAGT 750
||||||||||| |||||||| |||||||||||||| ||||||||||||||| || |||
Sbjct 637 GCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAATTTGACGATGAATACGACAGT 696
Query 751 GATGAAATTACAGCCGAGGTGTCCC-GGAATCCAGTGGGGAGTAAAGGT-CCGGTCAGAG 808
||||||||||||| || || |||| |||||||||||| || || ||| ||| ||||||
Sbjct 697 GATGAAATTACAGAGGATGT-TCCCCGGAATCCAGTGGAGATTAGGGGTACCG-TCAGAG 754
Query 809 GGAAAGTAGCTCCGGCGGTGAAACCCGT---CGTTCTTCCGACTAAATATGACGATGAAC 865
| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 755 GAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAATTTGACGATGAA- 813
Query 866 T-CGACAGTGACGAAATTGCGGCCGATGTG-CCTCGGAAGCAAGTGGAG 912
| ||| ||||| |||||| | ||||||||| || ||||| | |||||||
Sbjct 814 TACGATAGTGATGAAATTACAGCCGATGTGTCC-CGGAATCCAGTGGAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113503432245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5