BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492333
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25040.1 | Symbols: | Uncharacterised protein family (UPF04... 1160 0.0
> AT4G25040.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:12868174-12869457 FORWARD LENGTH=797
Length=797
Score = 1160 bits (628), Expect = 0.0
Identities = 696/728 (96%), Gaps = 7/728 (1%)
Strand=Plus/Plus
Query 1 CCCACTTCTTTCCTCTTTCTCTTGTCTCCGTGGAGTTTT-GGAATCTTACACAACAATAT 59
||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 4 CCCACTTCTTTTCTCTTTCTCTTGTCTTCGTGGAGTTTTCGG-ATCTTACACAACAATAT 62
Query 60 CTTTGTCTTTACTGCATTT-TTGGTCCTTTGTCTTCTTACCTTTCTAACAATTATTAAGA 118
||||||| |||||| |||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 63 CTTTGTC-TTACTGTATTTCTT-GTCCTTTTTCTTCTTACCTTTCTAACAATTATTAAGA 120
Query 119 AAAGTAAAGCTTGAATTTAAATAAAAATGATGGGAGACAATGAAGGAAGAAGAACGCCGC 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AGAGTAAAGCTTGAATTTAAATAAAAATGATGGGAGACAATGAAGGAAGAAGAACTCCGT 180
Query 179 TATTGAATCTTGGGGTTCAAGTGTCGATGAGAGTGTTAATCATCGGAGCTGCAATGGCCT 238
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 181 TATTGAATCTTGGGGTTCAAGTATCGATGAGAGTGTTAACCATCGGAGCTGCAATGGCCT 240
Query 239 CGATGTGGGTCATGATCACTAACCGTGAAGTCGCCTCTGTTTATGGCATCGCTTTTGAGG 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CGATGTGGGTCATGATCACTAACCGTGAAGTCGCATCTGTTTATGGCATCGCTTTTGAGG 300
Query 299 CTAAATACAGCTACTCCTCTGCCTTTAGGTATTTGGTGTACGCACAGATAGCTGTCTGCG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAAATACAGCTACTCCTCTGCCTTTAGGTATTTGGTGTACGCACAGATAGCTGTCTGCG 360
Query 359 CCGCGACATTGTTTAC-CTTGGTATGGGCTTGTTTAGCAGTCCGCAGAAGAGGACTTGTT 417
|||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CCGCGACATTGTTTACGCTTG-TATGGGCTTGTTTGGCAGTCCGCAGAAGAGGACTTGTT 419
Query 418 TTTGCACTCTTCTTCTTTGATTTGCTTACGACTTTGACGGCGATATCTGCTTTCTCTGCG 477
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TTTGCACTCTTCTTCTTTGATTTGCTTACGACTTTGACGGCGATATCAGCTTTCTCTGCT 479
Query 478 GCCTTCGCGGAAGGTTACGTTGGGAAGTACGGTAACAAACAAGCCGGTTGGCTTCCGATC 537
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 480 GCCTTCGCGGAAGGTTACGTAGGGAAGTACGGTAACAAACAGGCCGGTTGGCTTCCGATC 539
Query 538 TGCGGTTATGTGCATGTTTATTGCAGTCGTGTCACCATCTCACTCGCTATGTCCTTCGCC 597
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 540 TGCGGTTATGTGCATGGTTATTGCAGTCGTGTCACTATCTCCCTCGCTATGTCCTTCGCC 599
Query 598 TCTTTTGTCCTCTTGTTCATCCTTACGGTCTTAACTGCCTCCTCTGCTCGTCATTACTGA 657
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TCTTTTATCCTCTTGTTCATCCTTACGGTCTTAACTGCCTCCGCTGCTCGTCATTACTGA 659
Query 658 TTTTCTTACATTTAATATCATACTATACAATTCCTTCTACTCTAAGATCATTCAGTCTTT 717
||||||||||||| ||||||||| || ||||||||||||||| ||||| |||||||||||
Sbjct 660 TTTTCTTACATTTTATATCATACAATTCAATTCCTTCTACTCCAAGATAATTCAGTCTTT 719
Query 718 GTTATATA 725
||||||||
Sbjct 720 GTTATATA 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5