BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492335
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1962 0.0
> AT4G25030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G45410.3);
Has 125 Blast hits to 125 proteins in 36 species: Archae -
2; Bacteria - 31; Metazoa - 0; Fungi - 4; Plants - 88; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12864614-12866827
FORWARD LENGTH=1410
Length=1410
Score = 1962 bits (1062), Expect = 0.0
Identities = 1279/1379 (93%), Gaps = 34/1379 (2%)
Strand=Plus/Plus
Query 1 ATCTATCTTCTCCACATTACCACAACCACCTAACCTTTGA-CCATCTCTCTCTCCTTTAA 59
||||||||||||||| || || |||||||||||| | | ||| || | ||||||||||
Sbjct 36 ATCTATCTTCTCCACGTT---ACTACCACCTAACCTCTCATCCACCT-TTTCTCCTTTAA 91
Query 60 GCATATTTCATTTCA--T-C----GGAATTGTATCGTTCCTCACACACGCCTCTTCTTTC 112
||||||||||||||| | | ||||||||||||||||||||||||||||| || ||
Sbjct 92 GCATATTTCATTTCATCTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTC-TC-ATC 149
Query 113 TCTTATCCATTCTTGTCC-TTTCTCAGCTCAACGAGAATGGATAATTGTACCGGAGAAAA 171
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 150 TCTTATCCATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAAA 209
Query 172 TCCCATGGCTTCTCAGTTGAACATTCTCCGATGCCCCTTCTTGAGGAACATCAATGAGCC 231
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 210 TCCCATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCC 269
Query 232 CACTAACCTCTCTTTTTCTTCATCCTTGCCTTTTCCCATGCCTGCAAGAGCAGGGAAAGG 291
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 270 CACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTGCAAGAGCTGGGAAAGG 329
Query 292 ACCTATATTTGAAGATGGTCCCAATTTTGATACGGCATTTAGGCTTTTCCATGGCCAAGA 351
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 330 ACCTATATTTGAAGATGGTCCCAATTTTGATACGGCGTTTAGGCTTTTCCATGGCCAAGA 389
Query 352 TGGAGTTGTCCCTCTCTCTGACACCGCTCGAGCTGAAGCGCAGAAGCCTGTGCCTGTATT 411
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 390 TGGAGTTGTCCCTCTCTCTGACACCGCTCGAACTGAAGCCCAGAAGCCTGTGCCTGTATT 449
Query 412 CCATCCACTTGCTGCTAAGGCTGCCACAATTAGTCTCTCATCCTTTGGACCTGGAGGCCC 471
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||
Sbjct 450 CCATCCACTTGCTGCTAAGGCGGCCACTATTAGTCTCTCATCCTTTGGATCTGGAGGGCC 509
Query 472 TTTTGGGTTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAACAAGTCTGATTCATC 531
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 510 TTTTGGATTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATC 569
Query 532 CAAAAATAAGGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CAAAAATAAGGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTG 629
Query 592 CCCAATTGCAAAGTCATATCGTGCTGTAAGTGGTGTGGCACCGCTTGTGGCAAAGATCCT 651
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 630 CCCAATAGCAAAATCATATCGAGCTGTAAGTGGTGTGGCACCACTTGTGGCAAAGATCCT 689
Query 652 GCAACCCCCTCCAGGAATGAAATTCAAATGCCCTCAAGCAATAGTCACTGCTCGAGCAGC 711
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 690 GCAACCCCCTCCAGGCATGAAATTTAAATGCCCTCAAGCAATAGTCACAGCTCGAGCAGC 749
Query 712 AATATCAAAAACACCTTTTGCCAAGAACCTTCGCCCACAACCTTTACCAGCCAAAGTACT 771
||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 750 GATATCAAAAACACCTTTCGCCAAGAACCTCCGTCCACAACCTTTACCAGCTAAAGTACT 809
Query 772 AGTGATCGGGATGCTGGGCATGGCGCTAAATGTGCCTCTAGGTGTTTGGAGAGAGCACAC 831
||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||
Sbjct 810 AGTGATCGGGATGCTGGGCATGGCGTTAAATGTGCCTTTAGGGGTCTGGAGAGAGCACAC 869
Query 832 TGAAAAATATTCGGCAGCTTGGTTTGTAGCTCTTCACGCAGCGGTTCCATTCATTGGAAT 891
|||||| | ||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 870 TGAAAAGTTTTCGGCATCTTGGTTTATAGCTCTTCACGCAGCGGTTCCATTCATAGGAAT 929
Query 892 ACTGAGAAAGTCAGTGTTGATGCCTAAGACAGCGATGGTATTCACAATAGCAGCATCAGT 951
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 930 ACTGAGAAAGTCAGTGTTGATGCCTAAAACAGCTATGGTATTCACCATAGCAGCATCAGT 989
Query 952 TTTGGGACAGGTAATTGGGTCAAGAGCAGAGAGGCGGAGGCTCAAGTCGGTTGCTGAGAA 1011
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 990 TTTGGGACAGGTGATTGGGTCAAGAGCAGAGAGGCGGAGACTCAAGTCTGTAGCTGAGAA 1049
Query 1012 GAAGTTGACACTGGAGGTACCAATTCCGTCTTCTGCTGAAGCAAATCAGATGCAATTTGC 1071
|||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 1050 GAAGTTGACATTGGAGGTACCAAATCCGTCTTCTGTTGAAGCAGATCAGATGCAATTTGC 1109
Query 1072 GGGAGTTTCGTCAGATGGAAGATGCAGCGATAAAGTGGTGATGAAGTGGAATCCCATGAT 1131
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1110 CGGAGTTTCATCAGATGGAAGATGCGGTGATAAAGTGGTGATGAAGTGGAATCCCATGAT 1169
Query 1132 GCTTGATGTTGCAAGTCCTGTGTCTTCAGGAGCAGCTACTGCTGTTTGCTAAACAG-att 1190
||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| || |||
Sbjct 1170 GCTTGATGTTGCAAGCCCTGTGTCTTCCGGAGCAGCTACTGTTGTCTGCTAAA-AGGATT 1228
Query 1191 ttgt--tt-t-----a---t--atatata-a-ttgtttttcttgtatttttt-cggc-ga 1233
|||| || | | | ||||||| | |||||||||||||||||||| |||| ||
Sbjct 1229 TTGTAATTCTCTTCGAGGATTTATATATATAATTGTTTTTCTTGTATTTTTTTCGGCTGA 1288
Query 1234 ttgtatttAAAAAGTTTCTTAATGTTTGAGAAAAACAAGAATAAAGCCATTTTTTAAACT 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TTGTATTTAAAAAGTTTCTTAATGTTTGAGAAAAACAAGAATAAAGCCATTTTTTAAACT 1348
Query 1294 GTTAATTGTATTTAAATGTAAAAGACTTGTTTGATTGAATAAAAGGAAAGAAAAGTTGG 1352
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1349 GTTAATTGTATTTTAATGTAAAAGACTTGTTTGATTGAATAAAAGGAAAGAGAAGTTGG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5