BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492337
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family... 1794 0.0
> AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family
protein | chr4:12854385-12856541 REVERSE LENGTH=1281
Length=1281
Score = 1794 bits (971), Expect = 0.0
Identities = 1104/1167 (95%), Gaps = 14/1167 (1%)
Strand=Plus/Plus
Query 1 CTCTATATATAGTGTACCATTAGCCTCGCTAGTTAATTCACATCGAAGGAAACTCAAATA 60
|||||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 5 CTCTATATATAGTGAACCATTGGCCTCGCTAGTTAATTCATATCGAAGAAAACTCAAATA 64
Query 61 GAGGCATCAAGAGTGGAAGATCTCTATCTA-TTTCCCATTATCTTGTTTCTTTGTTAGTT 119
|||| ||||||||| |||||||||||| || |||||| || ||||||||| || ||||||
Sbjct 65 GAGGAATCAAGAGTCGAAGATCTCTATATATTTTCCC-TTCTCTTGTTTCCTTATTAGTT 123
Query 120 TTCTCTGATACTCCCATTCAAAAGTAGAAAAGGTACTGAAGAGCTCGCTCATTCCAAAAA 179
||||| || |||||||||||||||||| |||| |||||||||||||||||||| || |||
Sbjct 124 TTCTCCGACACTCCCATTCAAAAGTAG-AAAGATACTGAAGAGCTCGCTCATT-CACAAA 181
Query 180 ATAACCAAAATGGCTCTAACTCACAACGTAATGGCAGTTACATTTGGAGTCATGGGAAAC 239
||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||
Sbjct 182 ATAACCAAAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGGAGTCCTGGGTAAC 241
Query 240 ATCATATCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATCATATCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAA 301
Query 300 AAATCGATTGAAGGTTTTGAATCACTTCCCTACGTGTCAGCGCTCTTTAGCGCGATGCTA 359
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 302 AAATCGATAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTA 361
Query 360 TGGATTTATTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTCCTCATTACCATAAACGCT 419
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 TGGATTTACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCT 421
Query 420 GTGGGATGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GTGGGATGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAA 481
Query 480 GCTAGAATATCAACTTTGAAGGTTCTTGGGCTCTTGAATTTCTTGGGTTTTACTGCTATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 GCTAGAATATCAACTTTGAAGGTTCTTGGGCTCTTGAATTTCTTGGGTTTTGCTGCTATT 541
Query 540 ATTCTTGTCTGCGAGCTCCTAACCAAAGGATCGAACCGTGAGAAAGTCCTTGGAGGGATT 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTCTCGTCTGCGAGCTCCTAACCAAAGGATCGAACCGTGAGAAAGTCCTTGGAGGGATT 601
Query 600 TGCGTCGGATTTTCCGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATA 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCGTCGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATA 661
Query 660 CGAACAAAGAGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CGAACAAAGAGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCC 721
Query 720 ATTACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATTACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATA 781
Query 780 TTGGGTGCGTTTCTAGGAGCAGTTCAAATGGTTCTCTACGTCATATTCAAGTATTACAAA 839
|||||||||||||| |||||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct 782 TTGGGTGCGTTTCTCGGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAA 841
Query 840 GC-CC-C-AGTGGTTGATGAGACAGAGAAGCCTAAAACGGTGTCGGATCATTCCATCAAC 896
| || | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 842 ACTCCACTAGTGGTTGATGAGACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAAC 901
Query 897 ATGGTCAAGCTTTCGTCCACTCCGGCTTCTGGTGATCTTACGGTTCAGCCGCAGACTATT 956
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 ATGGTCAAGCTTTCATCTACTCCGGCTTCTGGTGATCTTACGGTTCAGCCGCAGACTAAT 961
Query 957 CTTGACGTGAGTCATCCTGTTCAAACTCATGGTGGTGACTTAGAGGATCAGATGGACAAG 1016
| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 962 CCTGACGTGAGTCATCCTATTAAAACTCATGGTGGTGACTTAGAGGACCAGATGGACAAG 1021
Query 1017 AAAATGTCAAACTAAATTAAGATTTTAGTTTT-ATATTATAAATTAGTGATTTACTT-AA 1074
|||||| |||||||| | ||||||| |||||| | ||||| ||||||||||| |||| ||
Sbjct 1022 AAAATGCCAAACTAAGTCAAGATTT-AGTTTTCA-ATTATGAATTAGTGATTGACTTTAA 1079
Query 1075 TGTTGTACTGTTGAGTCTGGTTTC-TAAACTTGTCTTTTATTT-CTCATCATTTTGTTTC 1132
||||| |||||||||||||||||| ||| ||||||||||||| |||||||| || ||||
Sbjct 1080 TGTTGAACTGTTGAGTCTGGTTTCCTAAT-TTGTCTTTTATTTTCTCATCATCTTCTTTC 1138
Query 1133 GAAATATCTCGAAATTGTACTATCCTT 1159
|||||||||||||||||||||||||||
Sbjct 1139 GAAATATCTCGAAATTGTACTATCCTT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5