BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492338
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4... 2158 0.0
> AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:12851969-12853845
REVERSE LENGTH=1432
Length=1432
Score = 2158 bits (1168), Expect = 0.0
Identities = 1307/1375 (95%), Gaps = 5/1375 (0%)
Strand=Plus/Plus
Query 1 AAACCATTCACAATCAGACAATGACATCTCTCCATACGTTACTCTTCACTTCTCTTCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAACCATTCACAATCAGACAATGACATCTCTCCATACGTTACTCTTCTCTTCTCTTCTTT 60
Query 61 TCTTCATCGTCTTCCCAGCCTTCACGTTTTCCTCCACCTTATTGTTTCAGAGTTTCAATT 120
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCATCGTCTTTCCAACCTTCACGTTTTCCTCCACCTTATTGTTTCAGAGTTTCAATT 120
Query 121 GGGAATCATGGAAGAAAGATGGAGGATTCTACAATTCTCTCCACAACTCCATCGACGACA 180
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GGGAGTCATGGAAGAAAGAAGGAGGATTCTACAATTCTCTCCACAACTCCATTGACGACA 180
Query 181 TAGCCAACGCTGGAGTCACTCATCTTTGGCTTCCTCCTCCTTCTCAATCCGTTGCTCCTG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAGCCAACGCTGGAATCACTCATCTTTGGCTTCCTCCTCCTTCTCAATCCGTTGCTCCTG 240
Query 241 AAGGTTACTTACCGGGAAAGCTATACGATCTAAACAGCTCCAAATACGGTTCTGAAGCTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 241 AAGGTTACTTACCGGGAAAGCTATACGATCTAAACAGCTCCAAATACGGTTCAGAGGCGG 300
Query 301 AACTGAAATCGTTAATCAAAGCGTTGAACCAAAAAGGAATAAAATCATTGGCTGATATAG 360
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 301 AACTGAAATCGTTAATCAAAGCGTTGAATCAAAAAGGAATAAAAGCTTTGGCTGATATAG 360
Query 361 TGATTAACCACAGAACAGCTGAGAGGAAAGACGATAAATGCGGGTACTGTTACTTCGAAG 420
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 361 TGATTAACCACAGAACAGCTGAGAGGAAAGACGATAAATGTGGATACTGTTATTTCGAAG 420
Query 421 GTGGGACTTCCGATGATCGTCTTGATTGGGATCCTTCCTTCGTCTGCCGCAATGACCCTA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GTGGGACTTCCGATGATCGTCTTGATTGGGATCCTTCCTTTGTCTGCCGCAATGACCCTA 480
Query 481 AGTTTCCCGGTACCGGAAACCTCGACACCGGAGGAGATTTTGATGGAGCGCCTGACATCG 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AATTTCCCGGTACCGGAAACCTCGACACCGGAGGAGATTTTGATGGAGCGCCCGACATCG 540
Query 541 ACCACCTTAACCCTAGAGTTCAGAAAGAGTTGTCGGAATGGATGAATTGGCTTAAATCTG 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 541 ACCACCTTAACCCTAGAGTTCAGAAAGAGTTGTCCGAATGGATGAATTGGCTTAAAACTG 600
Query 601 AAATAGGATTCCATGGTTGGAGATTTGATTATGTTCGAGGTTATGCATCTTCCATCACCA 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAATCGGATTCCATGGTTGGAGATTTGATTATGTTCGAGGTTATGCATCTTCCATCACCA 660
Query 661 AATTATATGTTCAGAATACTTCACCGGATTTTGCGGTGGGTGAGAACTGGAACGATATGA 720
||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 661 AATTATACGTTCAGAATACATCACCGGATTTTGCGGTGGGTGAGAAATGGGACGATATGA 720
Query 721 AGTATGGAGGAGACGGGAAACTAGACTATGATCAAAACGAGCATCGGTCGGGTCTCAAAC 780
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 AGTACGGAGGAGACGGGAAACTAGACTATGATCAGAACGAGCATCGGTCGGGTCTCAAAC 780
Query 781 AGTGGATCGAGGAAGCGGGTGGTGGTGTGTTAACAGCTTTTGATTTTACCACTAAAGGGA 840
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 781 AGTGGATCGAGGAAGCGGGTGGTGGTGTGTTGACAGCTTTTGATTTCACCACCAAAGGGA 840
Query 841 TCTTACAGTCTGCTGTCAAAGGTGAGCTTTGGAGACTAAAGGACTCGCAGGGAAAACCGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTTACAGTCTGCTGTCAAAGGTGAGCTTTGGAGACTAAAGGACTCGCAGGGAAAACCGC 900
Query 901 CTGGTCTGATCGGAATCAAT-CCCGGAAACGCGGTCACTTTCATAGACAACCATGACACT 959
||||| |||| ||||||| | ||||||||||| ||||| |||||||| |||||||| ||
Sbjct 901 CTGGTATGATAGGAATCA-TGCCCGGAAACGCTGTCACATTCATAGATAACCATGATACA 959
Query 960 TTCAGAACGTGGACTTTCCCTTCTGATAAAGTCTTGCTTGGATACGTTTATATTCTCACT 1019
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 960 TTCAGAACGTGGGTTTTCCCTTCTGATAAAGTCTTGCTTGGATACGTTTATATACTTACT 1019
Query 1020 CATCCGGGAATTCCTTGCATTTTTTATAATCATTACATAGAATGGGGACTAAAAGAGAGC 1079
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATCCAGGAACTCCTTGCATTTTTTATAATCATTACATAGAATGGGGACTAAAAGAGAGC 1079
Query 1080 ATCTCCAAGCTGGTGGCGATCAGGAACAAAAATGGCATTGGTAACACAAGCTCTGTTACG 1139
||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 1080 ATCTCAAAGCTGGTGGCTATCAGGAACAAAAATGGGATTGGTAGCACAAGCTCTGTAACG 1139
Query 1140 ATCAAAGTGGCGGAGTCGGATCTCTACGTGGCTAAT-ATTGATGATAAAGTTATCATGAA 1198
|| |||| ||| ||| ||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1140 ATAAAAGCGGCAGAGGCGGATCTCTACTTGGCTA-TGATTGATGATAAAGTTATCATGAA 1198
Query 1199 GATTGGACCAAAACAGGATGTGGGAACACTTGTTCCTTCTAATTTTGCGTTAGCTTATTC 1258
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 GATTGGACCAAAGCAAGATGTGGGAACACTTGTTCCTTCTAATTTTGCTTTAGCTTATTC 1258
Query 1259 AGGCCTTGACTTTGCTGTCTGGGAGAAGAAGTAACGCATAACTCAAATCATAAGAAACGT 1318
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1259 AGGCCTTGACTTTGCTGTCTGGGAGAAGAAGTAACGCATAACTCGAATCATAAGAAAAGT 1318
Query 1319 AATCGAATGTATCTTTTTCCTTTTTAA-AAAATATCTTGGCCGTATCTAAAGATA 1372
||||||||||||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct 1319 AATCGAATGTATCTTCTTCCTTTTTAATAAAACATTTTGGCAGTATCTAAAGATA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5