BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492340
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24970.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and... 3243 0.0
AT5G50780.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and... 342 7e-93
> AT4G24970.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase family protein | chr4:12831009-12835449
FORWARD LENGTH=2240
Length=2240
Score = 3243 bits (1756), Expect = 0.0
Identities = 2036/2165 (94%), Gaps = 43/2165 (2%)
Strand=Plus/Plus
Query 15 TCCAAAAGTTTTCTCTT-ATGGA-GA-A-TATTCATGTGAAGCGAGAGATTCCGCCACCT 70
||| ||| |||||| || ||||| | | |||||| |||||||||||||||| | ||
Sbjct 101 TCC-AAA-TTTTCTATTAATGGACAACAGTATTCACGTGAAGCGAGAGATTCAACTTCCA 158
Query 71 TCTACTTCCCCGGCTGGCTTTCCGGGAAGAGAATCTGTAACTGTAGTCGATCTCTGTAGT 130
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 159 TCTACTTCTCCGGCTGGCTTTCCGGGGAGAGAATCTGTAACTGTAGTCGATCTCTGTAGT 218
Query 131 AGCGATGACGACTCCGACATTGGAGAAATCGCCGCCGACAGAAGATATAATTCTGGAAAC 190
|| |||||||||||||||||||||||| |||||| | | ||| | || | ||||||
Sbjct 219 AGTGATGACGACTCCGACATTGGAGAAGTCGCCGGTG-GATTAGAGA-AAGT-AGGAAAC 275
Query 191 AA------C--T-TGAAGAGAGCG-CGAGATACTTATGGAGGAGGTTCTTCGGAAGTGGA 240
|| | | ||||||||| | |||||||||| | ||||||||||| ||||||||
Sbjct 276 AACTTCGTCGGTCTGAAGAGAG-GACGAGATACTT-T--TGGAGGTTCTTCCGAAGTGGA 331
Query 241 TAGGAATAATGTGAAGAAGGTAACGCCACTTGATGAGTTAGCAGTTGTGTTACCGGAAGG 300
|||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||
Sbjct 332 TAGGAATAATGTGAAGAAGGTAACAACACTTGCTGAGTTAGGAGTTGGGTTACCGGAAGG 391
Query 301 ATTCGGCCAATCCAATCCGCCGG-AAGATTTGACGCATGCTATTCCTGCGAATCCCTGTA 359
|||||||||||| ||||| |||| ||| |||||||||| |||||||||||||||| ||||
Sbjct 392 ATTCGGCCAATCGAATCCACCGGAAAG-TTTGACGCATCCTATTCCTGCGAATCCGTGTA 450
Query 360 ATGTCTTCAGGCCTATgccgccgccgccgccgccgcAGCCACCGTACGCGGGCACGTCCG 419
||||||||||||| || |||||||||||| | | ||||||||| || |||||||| |
Sbjct 451 ATGTCTTCAGGCC--TG-TACCGCCGCCGCCG-C-C-GCCACCGTATGCCGGCACGTCTG 504
Query 420 GGAGGATTGGCGGTTGTAAGCAGTTTTGGAAAGCTGGAGATTATGAAGGAGCACCTGGCG 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 505 GGAAGATTGGCGGTTGTAAGCAGTTTTGGAAAGCTGGAGATTATGAAGGAGCAGCTGGCG 564
Query 480 CTAACTGGGATCTTTCTTCAGGTGGTTTTGACCATGTAAGAGTCCATCCAAAGTTCTTAC 539
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 565 ATAACTGGGATCTTTCTTCAGGTGGTTTTGATCATGTAAGAGTCCATCCAAAGTTTTTGC 624
Query 540 ATTCTAATGCAACTAGTCACAAATGGGCTCTTGGAGCTTTTGCAGAGCTTTTGGACAATG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ATTCTAATGCAACTAGTCACAAATGGGCTCTTGGAGCTTTTGCAGAGCTTTTGGACAATG 684
Query 600 CATTGGATGAGGTTGCCAGTGGAGCTACTTATGTTAAGGTAGACATGCTTGAAAACAACA 659
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 685 CCTTGGATGAGGTTGCCAGTGGAGCTACTTATGTTAAAGTAGACATGCTAGAAAACAACA 744
Query 660 AAGCAGGAAACAGGATGTTATTAATTGAGGATAATGGGGGTGGGATGGATCCTGAAAAAA 719
||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 745 AAGGGGGAAACAGGATGTTATTAATTGAAGATAACGGGGGTGGGATGGACCCTGAAAAAA 804
Query 720 TGCGACAATGCATGTCTCTAGGATACTCTGCAAAAAGCAAACTTGCAAACACCATTGGAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TGCGACAATGCATGTCTCTAGGATACTCTGCAAAAAGCAAACTTGCAAACACCATTGGAC 864
Query 780 AATATGGCAATGGATTTAAAACTAGTACAATGAGACTTGGAGCTGATGTTATTGTATTCT 839
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 865 AATATGGCAATGGGTTTAAGACTAGTACAATGAGACTTGGAGCTGATGTTATTGTTTTCT 924
Query 840 CGCGTTGCCCTGGGAAAGATGGAAAGAGCTCTACGCAGAGCATCGGGCTCCTATCATATA 899
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 925 CGCGTTGCCCTGGGAAAGATGGAAAGAGCTCTACGCAGAGCATCGGACTCCTATCATATA 984
Query 900 CATTTCTAAGGAGCACAGGAAAGGAGGACATTGTTGTTCCCATGCTTGACTATGAAAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 CATTTCTAAGGAGCACAGGAAAGGAGGACATTGTTGTTCCCATGCTTGACTATGAAAGAA 1044
Query 960 GGGAGCCTGAATGGAGTAAAATAGTCCGGTCTTCC-CTTAGCGATTGGGATAAAAATGTG 1018
|||| |||||||||||||||||| ||||||||||| | || ||||||||||||||||||
Sbjct 1045 GGGACCCTGAATGGAGTAAAATAATCCGGTCTTCCAC-GAGAGATTGGGATAAAAATGTG 1103
Query 1019 GAAACAATAATTCAATGGTCGCCATTCTCTAGTGAAGAAGATCTTCTTCATCAGTTTGAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GAAACAATAATTCAATGGTCGCCATTCTCTAGTGAAGAAGATCTTCTTCATCAGTTTGAT 1163
Query 1079 CTGATGAAGGATCGTGGCACACGGATAATCATATATAACCTGTGGGAAGATGATCAAGGG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTGATGAAGGATCGTGGCACACGGATAATCATATATAACCTGTGGGAAGATGATCAAGGG 1223
Query 1139 ATGTTAGAACTGGATTTTGATGCTGATCCTTATGATATTCAACTTAGAGGTGTCAATCGG 1198
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1224 ATGTTAGAACTCGATTTTGATGCTGATCCTTATGATATCCAACTAAGAGGTGTCAATCGG 1283
Query 1199 GAAGAGAAG-AACATCAAAATGGCTTCTCAGTTTCCTAATTCTAGGCACTTCCTGACATA 1257
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GAAGA-AAGAAACATCAAAATGGCTTCTCAGTTTCCTAATTCTAGGCACTTCCTGACATA 1342
Query 1258 CAAACACTCACTAAGGAGTTATGTATCAATCCTCTACCTAAGAATTCCACCTGGGTTTCG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CAAACACTCACTAAGGAGTTATGTATCAATCCTCTACCTAAGAATTCCACCTGGGTTTCG 1402
Query 1318 TATCATTCTACGGGGAAAAGATGTTGAGCACCACAGCGTAGTGAATGACATGATGCAGAC 1377
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1403 TATCATTCTACGGGGAATAGATGTCGAGCACCACAGCGTAGTGAATGACATGATGCAGAC 1462
Query 1378 TGAGCAGATCACATATCGACCACAGTCTGAATCATATGGAGTTGTGACAAATATGTCTGC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 TGAGCAGATCACATATCGACCACAGTCTGAATCATATGGAGTTGTGACAAATATGTCTGC 1522
Query 1438 CATTGTAATTATTGGATTTGTGAAGGACGCAAAACATCATGTTGATGTTCAAGGCTTTAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 CATTGTAATTATTGGATTTGTGAAGGACGCAAAACATCATGTTGATGTTCAAGGCTTTAA 1582
Query 1498 TGTCTACCACAAAAATCGGCTCATCAAGCCATTTTGGAGGATATGGAATGCAACAGGCAG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 TGTCTACCACAAAAATCGGCTCATCAAGCCATTTTGGAGGATATGGAATGCAACAGGCAG 1642
Query 1558 TGATGGTCGTGGGGTCATAGGTGTTCTGGAAGCTAATTTTGTTGAGCCTGCTCATGATAA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TGATGGTCGTGGGGTCATAGGTGTTCTGGAAGCTAATTTTGTTGAGCCTGCTCATGATAA 1702
Query 1618 GCAAGGGTTTGAGCGTACAACAGTTCTCTCTAGACTTGAGTCACGGCTAGTTCAAATGCA 1677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1703 GCAAGGGTTTGAGCGTACAACAGTTCTCGCTAGACTTGAGTCACGGCTAGTTCAAATGCA 1762
Query 1678 GAAGACTTACTGGAGTACAAACTGTCACAAAATTGGCTATGCGCCCAGGCGACATCAAAA 1737
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1763 GAAGACTTACTGGAGTACGAACTGTCACAAAATTGGCTATGCGCCCAGGCGACGTGAAAA 1822
Query 1738 GTCTGCATATGGTTATGATAACAGAGACTCATCACCAGAAAATGATCGCGATGGACCTGC 1797
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1823 GTCTGCATATGGTTATGATAACAGAGACTCATCACCAGAAAATGATCGTGAGGGACC--- 1879
Query 1798 TCCATCAAGCATCAAAACTCCTACTCCAGCTTCTGACAAGTTCTACTCAAGCTCATATCC 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 ---ATCAAGCATCAAAACTCCTACTCCAGCTTCTGACAAGTTCTACTCAAGCTCATATCC 1936
Query 1858 AAATCATAATGGGGACAATGGTGTATCAGGGAAAGATAGTGCACAGTTGCAAGAGGAGCT 1917
|||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||
Sbjct 1937 AAATCATAATGGGGACAACGGTGTATCTGGGAAAGATGGTGCACGGTTGCAAGAGGAGCT 1996
Query 1918 GCGGCGTGAGAAAG-AGCGTAGGAAGGCACTTGAAGTTGAGGTTCAATTAGCAAGGCAAA 1976
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1997 GCGGCGTGA-AAAGGAGCGTAGGAAGGCACTTGAAGTTGAGGTTCAATTATCAAGACAAA 2055
Query 1977 AATTAGAAGAAATGAAGAAAGAGCAAGAGAATCTGATTGAGATATTCTCAGAGGAAAGAG 2036
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 AAATAGAAGAAATGAAGAAAGAGCAAGAGAATCTGATTGAGATATTCTCAGAGGAAAGAG 2115
Query 2037 ACCGACGTGATGGGGAGGAAGAAACTCTGAGAAATAAACTAGAGGAAGCGTCAAACACGA 2096
||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||
Sbjct 2116 ACCGACGTGATGGGGAGGAAGAAGTTTTGAGAAATAAGCTAGAGGAAGCGTCGAACACGA 2175
Query 2097 TCGACGATCTGTTGAATAAGATTAAAAAGCTGGAGGGATCTAAAGGCCCGAACTGGAGAC 2156
|||| ||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||
Sbjct 2176 TCGATGATCTGTTGAATAAGATAAAAAAGATGGAGGGATCTAAAGTCCCGAGCTGGAGAC 2235
Query 2157 ATTAA 2161
|||||
Sbjct 2236 ATTAA 2240
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 ATTCGCGCAAACATTCCAAAAGTTTTCTCTT 31
|||||||||||||||||||||||||||||||
Sbjct 1 ATTCGCGCAAACATTCCAAAAGTTTTCTCTT 31
> AT5G50780.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase family protein | chr5:20650269-20655212
FORWARD LENGTH=2724
Length=2724
Score = 342 bits (185), Expect = 7e-93
Identities = 259/294 (88%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 1431 TGTCTGCCATTGTAATTATTGGATTTGTGAAGGACGCAAAACATCATGTTGATGTTCAAG 1490
||||||| |||| | ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1424 TGTCTGCTGTTGTGACCATTGGATTTGTGAAGGATGCAAAACATCATGTGGATGTGCAAG 1483
Query 1491 GCTTTAATGTCTACCACAAAAATCGGCTCATCAAGCCATTTTGGAGGATATGGAATGCAA 1550
|||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1484 GCTTCAATGTTTACCACAAAAATCGCCTTATTAAGCCATTTTGGAGGATATGGAATGCGG 1543
Query 1551 CAGGCAGTGATGGTCGTGGGGTCATAGGTGTTC-TGGAAGCTAATTTTGTTGAGCCTGCT 1609
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1544 CAGGAAGTGATGGTCGTGGGGTCATAGGTG-TCTTGGAAGCTAATTTTGTTGAGCCTGCT 1602
Query 1610 CATGATAAGCAAGGGTTTGAGCGTACAACAGTTCTCTCTAGACTTGAGTCACGGCTAGTT 1669
||||||||||||||||| ||||| ||||||||| | |||||||| ||| |||| ||| ||
Sbjct 1603 CATGATAAGCAAGGGTTCGAGCGCACAACAGTTTTGTCTAGACTCGAGGCACGTCTACTT 1662
Query 1670 CAAATGCAGAAG-ACTTACTGGAG-TAC-AAACTGTCACAAAATTGGCTATGCG 1720
|| ||||||||| | ||| ||||| | | ||| |||||||||||||| ||||||
Sbjct 1663 CATATGCAGAAGGA-TTATTGGAGAT-CTAAA-TGTCACAAAATTGGATATGCG 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107178163575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5