BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492343
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24950.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 606 5e-173
> AT4G24950.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:12826282-12826755 FORWARD LENGTH=474
Length=474
Score = 606 bits (328), Expect = 5e-173
Identities = 430/478 (90%), Gaps = 11/478 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAGAGAGGA-A--A-ATCGACACGAAGGTCTTCAGCAGCAGTTGAGAGAGCT 56
||||||||||||||||| | | || ||||||| ||| || || |||||||||||||
Sbjct 1 ATGGAAGAAAGAGAGGAGAGTAGTTC-ACACGAACATCTGAAGGAGAAGTTGAGAGAGCT 59
Query 57 TGAGGAAGAATGGACAGCCATGAAAACCGGTAAACATTCATCTGCAGTTTCATGGATCAC 116
|||||| |||||||||||||||||||| |||||| | |||||||| ||||||||||| ||
Sbjct 60 TGAGGAGGAATGGACAGCCATGAAAACAGGTAAAAACTCATCTGCGGTTTCATGGATTAC 119
Query 117 AGTGGAAGAAGCTCTTGAGTATGTCGAAAACTCTCCCAGAAACCTAATGCTCTCTCTCCA 176
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTGGAAGATGCTCTTGAGTATGTCGAAAACTCTCCCAGAAACCTAATGCTCTCTCTCCA 179
Query 177 ACACAAACCAGAGGCAGAGATGATACACGAAAGATCACCTTTAAGGAGAAAACTCTTTCA 236
|||||||||| |||||||||||||||| |||| ||| || ||||||||||||||||||||
Sbjct 180 ACACAAACCAAAGGCAGAGATGATACAAGAAATATCGCCATTAAGGAGAAAACTCTTTCA 239
Query 237 CGACTTTGATGATGATGATCAAACCAAGAAGACGACATCGTTTTCTCATTCATCTTGTTG 296
||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 240 CGACTCTGATGATGATGATCAAACTAAGAAGACGACATTGCTTTCTCATTCATCTTGTTG 299
Query 297 GTCTTCGAATGTGACGAGTTCGAGTGATACTAGGAAATCAAAGAAGAAGACGACGATT-G 355
|||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||| |
Sbjct 300 GTCTTCGAATGTGACGAGTTCGAGTGATACCACGAAAGCAAAGAAGAAGACAACGATTAG 359
Query 356 AAAGGATT-GTCTCTGTTACTATGGTGTTGCTTTTGTCATGGGTTTTA-TATGTGTTGAT 413
|| | ||| || |||||||| |||||| |||||||||||||||||||| | |||||||||
Sbjct 360 AA-G-ATTTGTTTCTGTTACAATGGTGCTGCTTTTGTCATGGGTTTTAGT-TGTGTTGAT 416
Query 414 GAACGGCTTTGATCATCTCTTCATGAATACACATATCAATACTTTGGTTCCTACATGA 471
|||| |||||||||||||| |||||||||||| |||| ||||||||||||||| |||
Sbjct 417 GAACCACTTTGATCATCTCTCCATGAATACACAAATCATTACTTTGGTTCCTACTTGA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5