BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492344 Length=1277 Score E Sequences producing significant alignments: (Bits) Value AT4G24940.1 | Symbols: SAE1A, AT-SAE1-1, ATSAE1A | SUMO-activat... 1912 0.0 AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, c... 100 3e-20 > AT4G24940.1 | Symbols: SAE1A, AT-SAE1-1, ATSAE1A | SUMO-activating enzyme 1A | chr4:12823496-12826200 FORWARD LENGTH=1353 Length=1353 Score = 1912 bits (1035), Expect = 0.0 Identities = 1167/1231 (95%), Gaps = 8/1231 (1%) Strand=Plus/Plus Query 53 CGCAAATTCTAGTTTCTGAAAGCAAAGCTTTGTTGAATTGATAGCTTAAATTTGCGAATG 112 ||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||| Sbjct 99 CGCAAATTCTAGTTTCTTAGAGCAAAGCTTTGTTGAATTGATAGCTTGAATTTGGGAATG 158 Query 113 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCTTTGTACGACCGTCAGATTAGGGTTTGG 172 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 159 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGG 218 Query 173 GGCGCTAATGCTCAAAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 232 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 GGCGCTAATGCTCAGAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 278 Query 233 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTGATG 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 279 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTAATG 338 Query 293 GATGATCGTTTAGTGAATGA-GGAGGCCTTGAACGCAAACTTTTTGATTCTGCCTGATGA 351 ||||||||||||| || | ||||||||||||||| ||||||||||||| ||||||||| Sbjct 339 GATGATCGTTTAGCAAAC-ATGGAGGCCTTGAACGCTAACTTTTTGATTCCGCCTGATGA 397 Query 352 AAACGCTTACAGTGGCAAAACTGTGGCTGAGATTTGTTGTGAGTCACTCAAGGATTTCAA 411 ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 398 AAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAA 457 Query 412 TCCTATGGTCCGTGTTTCTGTAGAGAAAGGTGATCTGTCAACGCTTGGCACTGAtttttt 471 ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| Sbjct 458 CCCTATGGTCCGTGTTTCCGTAGAGAAAGGTGATTTGTCAATGCTTGGCACTGATTTTTT 517 Query 472 tGAGCAGTTTGATGTCGTAGTTATAGGCTACGGTTCTCGTGCTACCAAAAAATATGTCAA 531 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 518 TGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAAAATATGTCAA 577 Query 532 TGAAAAATGTCAGAAGTTAGTGAAACGTGTGGCATTCTATACAGTCGATTGTAGAGACTC 591 ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 578 TGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTC 637 Query 592 ATGTGGTGAAATCTTTGTGGACCTTCAAGATTACAAGTACATGAAGAAAAAGCTTGAAGA 651 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 638 ATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGAAAAAGCTTGAAGA 697 Query 652 GACGGTGGAATGCGAACTAAATTTCCCAAGTTTTCAGGAAGCTATATCAGTACCATGGAA 711 || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 698 GATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGGAAGCTATATCGGTACCATGGAA 757 Query 712 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 817 Query 772 GGAAAGTGAAGGGCGCAAACATGGAGAATGTTCGTTACTCGATCTTGCCAAAGTCTTGGA 831 || ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 818 AGAGAGTGAAGGGCGTAAACATGGAGAATGTTCGCTACTCGATCTTGCCAGAGTCTTGGA 877 Query 832 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATAGTCT 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 878 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATATTCT 937 Query 892 CTTAGAGAGACTTATCACTGGTACTACTGAATTCCCACCAGCTTGTGCCATTGTGGGAGG 951 ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 938 CTTGGAGAGACTTATCACTGGTACTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGG 997 Query 952 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGATCCATTGAAAAACTT 1011 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 998 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTT 1057 Query 1012 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCAACTCTTTTAC 1071 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1058 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACTCTTTTAC 1117 Query 1072 CTCTTAACCAACCAGTGTGTCCTAGATTTAATTTAA-CTCTATGATCTCTGAGATTCTAT 1130 ||||||| ||||||||| | ||| |||||| ||||| |||||| ||||||||||||| || Sbjct 1118 CTCTTAAACAACCAGTGGG-CCTTGATTTAGTTTAAACTCTATAATCTCTGAGATTCCAT 1176 Query 1131 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATAAACAAATT-AATGCAGAATTTC 1189 ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1177 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATGAACAAATTTAATGCAGAATTTA 1236 Query 1190 GTGGTGG-TCAGTTATGATTTTCCTT-GGTAGAATCAATTTCAGTTATTGACATT-GAAT 1246 |||| || |||||| ||||||||||| |||| ||||| ||||||||||||||||| |||| Sbjct 1237 GTGGAGGATCAGTTGTGATTTTCCTTCGGTAAAATCATTTTCAGTTATTGACATTTGAAT 1296 Query 1247 TGTTCAATTTCAAATTTCAAATATTATAATT 1277 ||||||||||||||||||||||||||||||| Sbjct 1297 TGTTCAATTTCAAATTTCAAATATTATAATT 1327 Score = 78.7 bits (42), Expect = 1e-13 Identities = 51/55 (93%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 1 TGAGAGAGTTGACCAAAATCGACCCAGTGC-AG-ACTAGGTTTATCCAAAGCTCC 53 ||||||||||||||||||||||||||||| || |||||||||||| |||||||| Sbjct 11 TGAGAGAGTTGACCAAAATCGACCCAGTGGGAGGACTAGGTTTATCGAAAGCTCC 65 > AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092 Length=1092 Score = 100 bits (54), Expect = 3e-20 Identities = 63/67 (94%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 126 TTACCGAGCAGGAGACTGCTTTGTACGACCGTCAGATTAGGGTTTGGGGCGCTAATGCTC 185 ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 75 TTA-CGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGGGGCGCTAATGCTC 17 Query 186 AAAGAAG 192 | ||||| Sbjct 16 AGAGAAG 10 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62800881795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5