BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492344
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24940.1 | Symbols: SAE1A, AT-SAE1-1, ATSAE1A | SUMO-activat... 1912 0.0
AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, c... 100 3e-20
> AT4G24940.1 | Symbols: SAE1A, AT-SAE1-1, ATSAE1A | SUMO-activating
enzyme 1A | chr4:12823496-12826200 FORWARD LENGTH=1353
Length=1353
Score = 1912 bits (1035), Expect = 0.0
Identities = 1167/1231 (95%), Gaps = 8/1231 (1%)
Strand=Plus/Plus
Query 53 CGCAAATTCTAGTTTCTGAAAGCAAAGCTTTGTTGAATTGATAGCTTAAATTTGCGAATG 112
||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||
Sbjct 99 CGCAAATTCTAGTTTCTTAGAGCAAAGCTTTGTTGAATTGATAGCTTGAATTTGGGAATG 158
Query 113 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCTTTGTACGACCGTCAGATTAGGGTTTGG 172
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 159 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGG 218
Query 173 GGCGCTAATGCTCAAAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 232
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GGCGCTAATGCTCAGAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 278
Query 233 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTGATG 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 279 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTAATG 338
Query 293 GATGATCGTTTAGTGAATGA-GGAGGCCTTGAACGCAAACTTTTTGATTCTGCCTGATGA 351
||||||||||||| || | ||||||||||||||| ||||||||||||| |||||||||
Sbjct 339 GATGATCGTTTAGCAAAC-ATGGAGGCCTTGAACGCTAACTTTTTGATTCCGCCTGATGA 397
Query 352 AAACGCTTACAGTGGCAAAACTGTGGCTGAGATTTGTTGTGAGTCACTCAAGGATTTCAA 411
||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 398 AAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAA 457
Query 412 TCCTATGGTCCGTGTTTCTGTAGAGAAAGGTGATCTGTCAACGCTTGGCACTGAtttttt 471
||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 458 CCCTATGGTCCGTGTTTCCGTAGAGAAAGGTGATTTGTCAATGCTTGGCACTGATTTTTT 517
Query 472 tGAGCAGTTTGATGTCGTAGTTATAGGCTACGGTTCTCGTGCTACCAAAAAATATGTCAA 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 518 TGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAAAATATGTCAA 577
Query 532 TGAAAAATGTCAGAAGTTAGTGAAACGTGTGGCATTCTATACAGTCGATTGTAGAGACTC 591
||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 578 TGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTC 637
Query 592 ATGTGGTGAAATCTTTGTGGACCTTCAAGATTACAAGTACATGAAGAAAAAGCTTGAAGA 651
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 638 ATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGAAAAAGCTTGAAGA 697
Query 652 GACGGTGGAATGCGAACTAAATTTCCCAAGTTTTCAGGAAGCTATATCAGTACCATGGAA 711
|| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 698 GATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGGAAGCTATATCGGTACCATGGAA 757
Query 712 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 817
Query 772 GGAAAGTGAAGGGCGCAAACATGGAGAATGTTCGTTACTCGATCTTGCCAAAGTCTTGGA 831
|| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 818 AGAGAGTGAAGGGCGTAAACATGGAGAATGTTCGCTACTCGATCTTGCCAGAGTCTTGGA 877
Query 832 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATAGTCT 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 878 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATATTCT 937
Query 892 CTTAGAGAGACTTATCACTGGTACTACTGAATTCCCACCAGCTTGTGCCATTGTGGGAGG 951
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 938 CTTGGAGAGACTTATCACTGGTACTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGG 997
Query 952 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGATCCATTGAAAAACTT 1011
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 998 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTT 1057
Query 1012 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCAACTCTTTTAC 1071
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1058 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACTCTTTTAC 1117
Query 1072 CTCTTAACCAACCAGTGTGTCCTAGATTTAATTTAA-CTCTATGATCTCTGAGATTCTAT 1130
||||||| ||||||||| | ||| |||||| ||||| |||||| ||||||||||||| ||
Sbjct 1118 CTCTTAAACAACCAGTGGG-CCTTGATTTAGTTTAAACTCTATAATCTCTGAGATTCCAT 1176
Query 1131 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATAAACAAATT-AATGCAGAATTTC 1189
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1177 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATGAACAAATTTAATGCAGAATTTA 1236
Query 1190 GTGGTGG-TCAGTTATGATTTTCCTT-GGTAGAATCAATTTCAGTTATTGACATT-GAAT 1246
|||| || |||||| ||||||||||| |||| ||||| ||||||||||||||||| ||||
Sbjct 1237 GTGGAGGATCAGTTGTGATTTTCCTTCGGTAAAATCATTTTCAGTTATTGACATTTGAAT 1296
Query 1247 TGTTCAATTTCAAATTTCAAATATTATAATT 1277
|||||||||||||||||||||||||||||||
Sbjct 1297 TGTTCAATTTCAAATTTCAAATATTATAATT 1327
Score = 78.7 bits (42), Expect = 1e-13
Identities = 51/55 (93%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 1 TGAGAGAGTTGACCAAAATCGACCCAGTGC-AG-ACTAGGTTTATCCAAAGCTCC 53
||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 11 TGAGAGAGTTGACCAAAATCGACCCAGTGGGAGGACTAGGTTTATCGAAAGCTCC 65
> AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein,
chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092
Length=1092
Score = 100 bits (54), Expect = 3e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 126 TTACCGAGCAGGAGACTGCTTTGTACGACCGTCAGATTAGGGTTTGGGGCGCTAATGCTC 185
||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 75 TTA-CGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGGGGCGCTAATGCTC 17
Query 186 AAAGAAG 192
| |||||
Sbjct 16 AGAGAAG 10
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5