BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492346
Length=464
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24920.1 | Symbols: | secE/sec61-gamma protein transport pr... 728 0.0
AT5G50460.1 | Symbols: | secE/sec61-gamma protein transport pr... 270 7e-72
> AT4G24920.1 | Symbols: | secE/sec61-gamma protein transport
protein | chr4:12819511-12820736 REVERSE LENGTH=510
Length=510
Score = 728 bits (394), Expect = 0.0
Identities = 443/466 (95%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaa-aaGCGACATGGACGCCATTGATTCCGTCGTGGATCCGCTTAGAG 59
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 49 AAAAAAAAAAAAAAAGAAGGGACATGGACGCCATTGATTCCGTCGTGGATCCTCTTAGAG 108
Query 60 ACTTTGCCAAGGACAGCATTCGCCTCGTTAAGCGTTGTCACAAGCCAGATCGCAAAGAAT 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 109 ACTTTGCCAAGGACAGCATTCGCCTCGTTAAGCGTTGTCATAAGCCAGATCGCAAAGAAT 168
Query 120 TCACGAAAGTGGCAGTGCGTACAGCAATCGGGTTCGTAGTAATGGGATTCGTGGGCTTCT 179
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 169 TCACGAAAGTTGCAGTCCGTACAGCAATCGGGTTCGTAGTAATGGGATTCGTGGGATTCT 228
Query 180 TTGTGAAGCTCATCTTTATTCCCATCAACAACATCATCGTCGGTGCTACTTAGATAACTA 239
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 229 TTGTGAAGCTCATCTTTATTCCAATCAACAACATCATCGTCGGTGCTACTTAGATAACAA 288
Query 240 AGGGAAGATAAAAAGATGGAGAAGGGTAGTTACAGCTTTGTTG-TTTCATGAAGACACTT 298
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 289 AGGGAAGAT-AAAAGATGGAGAAGGGTAGTTACAGCTTTGTTGTTTTCATGAAGACACTT 347
Query 299 CACAGtttttttgttttttttttttGTTCAGATACTCAAAAAGAGGAAACATTTTGTGAA 358
||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 348 CACAG--TTTTT-TTCTTTTTTCTTGTTCAGATACTCAAAAAGAGGAAACATTTTGTGAA 404
Query 359 CCTAGTTTAACCACACATTTGAGATCAATCTCTAGTAATTTGCTTTCTGTTTAATGTATG 418
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 405 CCTAGTTTAACCACACATTTGGGATCAATCTCTAGTAATTTTCTTTCTGTTTAATGTATG 464
Query 419 TCACTGTTTATTACGCTGTTCCGTAAGAAAATTGAAAGCTTTGGTG 464
|||||||||||| | ||||||||| ||||| ||||||| |||||||
Sbjct 465 TCACTGTTTATTTCACTGTTCCGTTAGAAATTTGAAAGTTTTGGTG 510
> AT5G50460.1 | Symbols: | secE/sec61-gamma protein transport
protein | chr5:20551437-20552566 REVERSE LENGTH=500
Length=500
Score = 270 bits (146), Expect = 7e-72
Identities = 190/212 (90%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 22 CATGGACGCCATTGATTCCGTCGTGGATCCGCTTAGAGACTTTGCCAAGGACAGCATTCG 81
|||||||||||||||||||||||| ||||| || |||||||| || ||||| || |||||
Sbjct 57 CATGGACGCCATTGATTCCGTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGTATTCG 116
Query 82 CCTCGTTAAGCGTTGTCACAAGCCAGATCGCAAAGAATTCACGAAAGTGGCAGTGCGTAC 141
||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 117 TCTCGTCAAGCGTTGCCACAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTAC 176
Query 142 AGCAATCGGGTTCGTAGTAATGGGATTCGTGGGCTTCTTTGTGAAGCTCATCTTTATTCC 201
|| || ||||| || |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 177 CGCGATTGGGTTTGTGGTAATGGGATTCGTTGGCTTCTTTGTGAAGCTAATCTTCATTCC 236
Query 202 CATCAACAACATCATCGTCGGTGCTACTTAGA 233
||||||||||||||||||||||| |||||||
Sbjct 237 GATCAACAACATCATCGTCGGTGCCACTTAGA 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22052790533
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5