BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492348
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24900.1 | Symbols: | unknown protein; Has 119 Blast hits t... 2154 0.0
> AT4G24900.1 | Symbols: | unknown protein; Has 119 Blast hits
to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa
- 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 4 (source: NCBI BLink). | chr4:12814838-12817622 FORWARD
LENGTH=1529
Length=1529
Score = 2154 bits (1166), Expect = 0.0
Identities = 1345/1432 (94%), Gaps = 9/1432 (1%)
Strand=Plus/Plus
Query 1 GAAAGACGAAGAAGATGAAGAAACCATCAAAAAAGAGCGAAACCGAGTTCTGCAAGGTGT 60
|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 16 GAAAGAAGAAGAAGATGAAGAAACCATCGAAAAAGAGCGAAATCGAGTTCTGCACGGTGT 75
Query 61 GCCGATTGCATCACGACCAAGGCTCGCGCCACAAGTACTTCCCTCGCCACAAAAGTTCCC 120
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GCCGGTTTCATCACGACCAAGGCTCGCGCCACAAGTACTTCCCTCGCCACAAAAGTTCCC 135
Query 121 TCTCTTCCTTACTCGATCGATTCCGATCCAAGATAGCTGACGTCAGATTCTTCCTGAAAA 180
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 136 TCTCTTCCTTACTCGATCGATTCAGATCGAAGATAGCTGACGTCAGATTCTTCCTGAAGA 195
Query 181 ACCCTAGCGTTCTGCGGCCACAAGAGCAGTCGCAAAACCGTGTTTGGTGTGTTTTCTGCG 240
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 196 ACCCTAGCGTTCTACGGCCACAAGAGCAGTCGCAAAACCGTGTTTGGTGTGTCTTCTGCG 255
Query 241 ATGAAGAGATCGTTGAGCTCGGTAGCTCCTTCGCCTGTTCTAAGGCAATCACTCACTTCG 300
|||| || || ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 256 ATGAGGACATTGTTGAGCTCGGTAGCTCCTTCGCCTGTTCTAAGGCTATCAATCACTTCG 315
Query 301 CAAGTTCTGATCATCTTAAGAATATCAAGCAATTTCTATTGAAAAATGGCCCGGCAATGG 360
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 316 CAAGTTCCGATCATCTTAAGAATATCAAGCAATTTCTGTCGAAAAATGGCCCGGCAATGG 375
Query 361 ATTGCGTAGACGAGTTCCGAATTTCAGAAGCTGATGTAGCTAAGTGGGaaaaaaaaTGCC 420
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 376 ATTGCATAGACGAGTTCCGAATTTCAGAAGCTGATGTAGCTAAGTGGGAGAAAAAATGTC 435
Query 421 AGTCATTGGGAAATGAAGATGCATCCTCTTTTAAAGGGTCCTGTGGACAGCTGTTTGGGA 480
||||||| ||||||||||||||||| | ||| || ||||||||||||||||||| |||||
Sbjct 436 AGTCATTTGGAAATGAAGATGCATC-T-TTTGAA-GGGTCCTGTGGACAGCTGTCTGGGA 492
Query 481 CATCTAATGATATCCACACTAAACTTGCGTTTGAAACTATGGATAGAATTGAAAAAGTTC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 493 CATCTAATGATATCCACACTAAACTTGCGTTTGAAACTATGGATAGAATTAAAAAAGTTC 552
Query 541 CTGCACACCATATAAATTCACATAATTCAAATGTTGTTATGCCTTTACAGTATAATACGA 600
|||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 553 CTGCACACCATATAAATTCATATAAATCAAATGATGTTATGCCTTTACAGTATAATACGA 612
Query 601 ATGAGTATCAGATATCACTTTCAGAGATTCCTGGAGTTACACATTATGGTTCATATCTGA 660
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 613 ATGAGTATCAGATATCACTTTCAGAGATTCCTGGAGTTATACATAATGGTTCATATCTGA 672
Query 661 ACATGGGTGCTTCCCACCTCCCTCTATGTCATGAATTAGGGAACGGGTTTGGCAAACATT 720
|||||| || |||||| ||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 673 ACATGGATGATTCCCAATTCCCTCTATGTGATGAATCAGGGAACGGGTTTGGCGAACATT 732
Query 721 CCATTCCTTGTAGAAGCAAGGA-TGACTCGGGCTACGGTAATTATTGCACCCAAGAGAAT 779
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 733 CCATTCCTTGTAGAAGCAAGGACT-ACTCGGGCAACGGTAATTATTGCACCCAAGAGAAT 791
Query 780 TATCAGGTGAGCCAGGATAAGAAACAAATTGAGGGCAATTACAATCCTCCAGGTGTGGTG 839
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 792 TATCAGGTGAGCCAAGATAAGAAACAAATTGATGGCTCTTACAATCCTCCAGGTGTGGTG 851
Query 840 GGCATGTCTAGCATTTCGTCCTCACATTCCACCGATGCTGGCGGGAACGTTCACTCTGGA 899
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 852 GGAATGACTAGCATTTCGTCCTCACATTCCACTGATGCTGGCGGGAACGTTCACTCTGGA 911
Query 900 GCTCCTCCACCATGGCTTGATGCAAATGATGGGAATGTTTCTAATATTCAACTAAACCAG 959
||||||||||| ||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 912 GCTCCTCCACCTTGGCTTGATGCAAATGATGGGGATTTTTCTAGTGTTCAACTAAACCAA 971
Query 960 TCATACATGGCCTGCGTTCAGGCAAAGGTACCTGGGAAGAATCGTAAGCTGAACCCTAAT 1019
||| | ||||| || ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 972 TCAGATGTGGCCCGCTTTCAGGCAAAGGTACCTGGAAAGAATCGTAAGCTGAATCCTAAT 1031
Query 1020 AGGGTTGGCGCTGCATGGGCTGAAAGGAGAAAGATAGAGATAGAAATGGAGAAGAAAAGT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1032 AGGGTTGGCGCTGCATGGGCTGAAAGGAGAAAGATAGAGATAGAAATGGAGAAGA---GT 1088
Query 1080 GGACATGCAACGAATAGTAATATTGATGCAGACTGGCTTCCCAACTTTGGTCGGGTTTGG 1139
||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1089 GGACATGTAACGAAGAGTAACATTGATCCAGACTGGCTTCCCAACTTTGGTCGGGTTTGG 1148
Query 1140 CAATCAGGCACTCGAAAAGAATCCAGAAAAGAATTTGAGAAGGAAAAACGGAAGTTAGTA 1199
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1149 CAATCAGGCACTAGAAAAGAATCCAGGAAAGAATTTGAGAAGGAAAAACGGAAGTTAGTG 1208
Query 1200 AAAACTGAAAGTGTCTCGACAGAATCAGAACCAGTCAAAATACAACCGTACATTAGCAAA 1259
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AAAACTGAAAGCATCTCTACAGAATCAGAACCAGTCAAAATACAACCGTACATTAGCAAA 1268
Query 1260 CGGGTGCGAAGAGAGAGTGGTGAGTAATGGCTGTGGCTGGCATCCAAAATGGCAACTAGT 1319
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1269 CGGGCGCGAAGAGAGAGTGGTGAGTAATGGCGGTGGCTGACATCCAAAATGGCAACTAGT 1328
Query 1320 AAGGATTATCTCATGTAGGAATTTTAGAATCCTCGTTTATTGGAGATCCTGCTCCAGTGT 1379
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||
Sbjct 1329 AAGGATTATCTCATGTAGGAATTTTATAATCCTCGTTTCCTGGAGATCCTACTCCAATGT 1388
Query 1380 ATCTTGTTTTTCATGTTGAGCTATGATAGAATTTAGAGGTATGTGATCCTGG 1431
|||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1389 ATCTTGTTTT-CATGTTGAGCTATGATAGAATTTAGAAGTATGTGATCCTGG 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5