BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492350
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24880.1 | Symbols: | unknown protein; Has 30201 Blast hits... 2187 0.0
> AT4G24880.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12808520-12811377
FORWARD LENGTH=1486
Length=1486
Score = 2187 bits (1184), Expect = 0.0
Identities = 1387/1483 (94%), Gaps = 22/1483 (1%)
Strand=Plus/Plus
Query 1 TTTTAGGTCGAACCAGTCCATAAAGGTCGGACCAATAGAAAGTGGTTGCTCGAACTCTTC 60
||||||||||||||||||| ||| |||| ||||||||||| || ||||||||||||||||
Sbjct 6 TTTTAGGTCGAACCAGTCCTTAAGGGTCCGACCAATAGAACGTAGTTGCTCGAACTCTTC 65
Query 61 TTCCCAAAATGGCGCCTCATGAAATTCGCCGTCCTTTCAAACGTCGACCAATCTCCGACC 120
|||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 66 TTCCAAAAATGGCGCCTCATGAAATTCGCCGTCCTTTCAAGCGACGACCTATCTCCGATC 125
Query 121 AGCAGAAACGCCGAGAGCTTTCCCTTCTCCGTCAGACTCAGCATCGCAGTGATGCTCAGC 180
| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 126 AACAGAAACGCCGAGAGCTTTCTCTTATTCGTCAGACTCAGCATCGCAGTGATGCTCAGC 185
Query 181 AGCGAGCCCGAAACCTCGCCTCTTCCGTAATCTCGCTCCAATCCTCCTCGCCCGATGTCG 240
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 186 AGCGAGCCCGAAACCTCGCCTCTTCCTTAATCTCGCTCCAATCCTCCTCTCCCGATGTCG 245
Query 241 ACCCGGAGATATTATCTGAAGCCGAG-CTCAAC--GAAGGAACCGAATTGGAATCTAGTA 297
|||| |||||| |||||||||||| | || | | | ||||||||||| |||||| ||||
Sbjct 246 ACCCAGAGATACTATCTGAAGCCGTGCCTGAGCTTGTAGGAACCGAATCGGAATCGAGTA 305
Query 298 ACTTTGACGTTCGTCAAGCTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GCTTTGACGTTCGTCAAGCTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAA 365
Query 358 GGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGGT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGGT 425
Query 418 ATGTGGTAGCAAGACCAGCTGGAAAAAGATGTTTTGTAGTTTCATCTGATGGAACAACTG 477
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 426 ATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGATGGAACAACTG 485
Query 478 TTAGTAGAGTACGCAATGGATCTATC-TTGCATCATTTCCCTTCTGCATTGCCTGGTGGT 536
||||||||||||| ||||| || | | ||||||| ||||||||||||||| |||||||||
Sbjct 486 TTAGTAGAGTACGAAATGGGTCCA-CTTTGCATCTTTTCCCTTCTGCATTACCTGGTGGT 544
Query 537 GCCAGGAAAAAAGGCGCTTCTGGACCC-GCAAGCTCATATTCTATACTAGACTGTATCTT 595
|| |||||||||||||||||||| ||| |||| ||| || ||||||||||||||||||||
Sbjct 545 GCGAGGAAAAAAGGCGCTTCTGG-CCCTGCAAACTCGTACTCTATACTAGACTGTATCTT 603
Query 596 TCACGAGTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGGGGTTACTCGCT 655
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 604 TCACGAGTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGAGGTTACTCGCT 663
Query 656 TTATGAATGTACAGCAGAGTTCAGGTTCTTTTGGATGCAATCGAAACTTGCTGAGACTGG 715
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 664 TTATGAATGCACATCAGAGTTCAGGTTCTTTTGGTTGCAATCGAAACTTGCTGAGACCGG 723
Query 716 TGCTTGTGATCCGCCTTCCTTTTACCACAAGTTCAGGTTCAGTGCT-GTTCCTTTTTATA 774
||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||| |
Sbjct 724 TGCTTGTGATCCGCCTTCCGTCTACCACAAGTTCAGGTTCAGTG-TAGTTCCTTTTTACA 782
Query 775 ACTGCGACCAAAGCGGACTTCACTCAGCTTATACAGGATCATCACCTTATGTCAAGGATG 834
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 783 ACTGCGACCAAAGCGGACTTCACTCAGCTTATACAGGATCATTACCTTATGTCAGGGATG 842
Query 835 GATTGTTGTTTTATAACAAGCATGCACATTATCATACTGGAAATACTCCTCTGGTGTTGA 894
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GATTGTTATTTTATAACAAACATGCACATTATCATACTGGAAATACTCCTCTGGTGTTGA 902
Query 895 TATGGAAGGATGAGAGTTGTAGTCAGTATGTCATCGATACAGATAACAATGGAGAAGTTC 954
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 903 TATGGAAGGATGAGAGCTGTAGTCAGTATGTCATCGATACTGATAACAATGGAGAAGTTC 962
Query 955 CACATCAACAACATATAGTCTTGGAATTGCAAGAAGAAGGAAAACTTGTAACATCAGATG 1014
|| | ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 963 CAAACCAACAACATATTGTCTTGGAGTTGCAAGAAGAAGGAAAACTTGTAACATCTGATG 1022
Query 1015 ATCCACCTGTACCATTCAGTTACTTAAACGCAGATTTTGTCAAACAGTCAGGACTGTCTT 1074
||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||
Sbjct 1023 ATCCACCTGTACCATTCAGTTGCTTAAATGCAGATTTTGTAAAACAGTCAGGGCTGTCTT 1082
Query 1075 CAGGAAGTCTTATTCGCTTTGCCATTGGCGATGGAGGGCT-AAAGTGTGTGGATGGTAGA 1133
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1083 CAGGAAGTCTTATTCGCTTTGCCATTGGCGATGGAGGGCTGAAA-TGTGTGGATGGTAGA 1141
Query 1134 TTTGAGAAGGCGGATTTGCAATATATCGGTGTGTCAAATCGAGCCCGAGCCTTTGCTGAT 1193
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1142 TTTGAGAAGGCGGATTTGCAATATATCGGTGTATCAAATCGAGCCCGAGCCTTTGCTGAT 1201
Query 1194 AGCTATTCCAAGATCATGTTTCAATATATGGCCCGACATTCTCCCCTGAAAGTAGAAGAT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGCTATTCCAAGATCATGTTTCAATATATGGCCCGACATTCTCCCCTGAAAGTAGAAGAT 1261
Query 1254 CTTGCATCTACGATTTCACATGAGAACCAGCAAGACAAGCCCCCTGAAGTGGAGATGTCC 1313
||||| ||||||||||||| |||| |||| || |||||||||||||||||||||||||||
Sbjct 1262 CTTGCTTCTACGATTTCACCTGAGGACCAACAGGACAAGCCCCCTGAAGTGGAGATGTCC 1321
Query 1314 GATTGACGAGAAGAGAGTC-AAAGTATATTGTTTGGTCACTGTGTTGTGTTCGTGCAAAC 1372
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1322 GATTGACGAGAAGAGAGTCTAAAGTATATTGTTTGGTCACTGTGTTGTGTTCGTGGAAAC 1381
Query 1373 AGAGGGAAGGAAATTTTTAAACTCGTAGCCACCtttttttGGCTTCTCACACAATTGTTA 1432
||||||||| ||||||| ||| ||||||||| |||||||||||||||| | |
Sbjct 1382 AGAGGGAAGTAAATTTTGAAAAACGTAGCCACGTTTTTTTGGCTTCTCA-----T----A 1432
Query 1433 TGATGTAAGATAGTTTGTTTTATGAAAATGAGAAGaaaaaaaa 1475
||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1433 TGATGTAAGATAGTTTGTTCTATGAAAATGAGAA-AAAATAAA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5