BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492352
Length=2400
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24840.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3740 0.0
> AT4G24840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: protein transport, Golgi organization; LOCATED
IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG
complex component, COG2 (InterPro:IPR009316); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:12796247-12800949 REVERSE LENGTH=2572
Length=2572
Score = 3740 bits (2025), Expect = 0.0
Identities = 2209/2300 (96%), Gaps = 4/2300 (0%)
Strand=Plus/Plus
Query 1 CAGAGGAAGCAGCGAAGCGAAAAATGTCAGATCTGGTCGCGACGTCGCCGTCGCCGTCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGAGGAAGCAGCGAAGCGAAAAATGTCAGATCTGGTCGCGACGTCGCCGTCGCCGTCGT 60
Query 61 CAGCGCCGAGATCCGCCACAGATTTCTTCTCCGATCCTTACGACTCTCATCCTCCATGGT 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 61 CAGCGCCGAGATCCGCCACAGACTTCTTCTCCGATCCTTACGACTCTCATCCTCTATGGT 120
Query 121 TCAAGCCTTCCCTCTTCCTTTCCCCTAACTTCGACTCCGAGTCCTACATCTCAGAGCTCC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGCCTTCCCTCTTCCTCTCCCCTAACTTCGACTCCGAGTCCTACATCTCAGAGCTCC 180
Query 181 GTACATTCGTTCCCTTTGACACTCTCCGATCCGAGCTCCGGTCACACCTTGCATCCCTCA 240
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GTACATTTGTTCCCTTTGACACTCTCCGATCTGAGCTCCGGTCACACCTTGCATCCCTCA 240
Query 241 ACCGCGAACTTGTTGATCTCATCAATCGAGATTATGCCGATTTCGTGAATTTAAGCACTA 300
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ACCGAGAACTTGTCGATCTCATCAATCGAGATTATGCCGATTTCGTCAATTTAAGCACTA 300
Query 301 AGCTCGTAGATATCGATGCAGCTGTGGTTCGTATGCGTGCTCCGCTCCTTGAGCTCCGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTCGTAGATATCGATGCAGCTGTGGTTCGTATGCGTGCTCCGCTCCTTGAGCTCCGTG 360
Query 361 AGAAGATCACTGGATTTCGTGGATCTGTGGAGGCAGCACTTTTTTCACTAAGGAATGGAT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGAAGATCACTGGATTTCGTGGATCTGTGGAGGCAGCACTTTTTGCACTAAGGAATGGAT 420
Query 421 TGCAGCAGCGCTCTGATGCTGCTGCTGCCAGGGAGGTTCTCGAATTGTTGCTCGACACAT 480
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 TGCAGCAGCGTTCTGATGCTGCTGCTGCCAGGGAGGTTCTCGAATTATTGCTCGACACAT 480
Query 481 TTCATGTGGTATCCAAGGTTGAAAAACTTATTAAAGTTCTACCAAGTACTCCTTCTGATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCATGTGGTATCCAAGGTTGAAAAACTTATTAAAGTTCTACCAAGTACTCCTTCTGATT 540
Query 541 GGCAAAACGAGGATGCGAATTCCATGGGAAGGGGTTCTATGAATTATGAGAATTCAACGC 600
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 541 GGCAAAACGAGGATGCAAATTCCATGGGAAGGAGTTCTATGAATGATGAGAATTCAACGC 600
Query 601 AGCAAGATGGCACAACCATGAGAGAAACCCAGAGCATGCTTTTGGAAAGAATTGCTAGTG 660
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 601 AGCAAGATGGCACAACCATGAGAGAAACCCAGAGCATGCTATTGGAAAGAATAGCTAGTG 660
Query 661 AAATGAATCGGCTCAAGTTCTATATGGCTCATGCACAGAACCTGCCTTTCATTGAGAACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATGAATCGGCTCAAGTTCTATATGGCTCATGCACAGAACCTGCCTTTCATTGAGAACA 720
Query 721 TGGAGAAGAGGATTCAGAGCGCTAGTGTGTTATTGGATGCTAGTCTAGGGCATTGCTTCA 780
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 721 TGGAGAAGAGGATTCAGAGCGCTAGTGTGTTATTGGATGCTAGCCTAGGTCATTGCTTCA 780
Query 781 TTGATGGGCTAAACAACAGCGATACAAGCGTCCTTTACAACTGCTTACGTGCATACGCTG 840
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 781 TTGATGGGCTAAACAACAGCGATACAAGTGTCCTTTACAACTGCTTACGTGCATATGCTG 840
Query 841 CCATTGATAACACCAACAATGCTGAAGAAATTTTCCGTACAACGATTGTGGCTCCATATA 900
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 841 CCATTGATAACACCAACGCTGCAGAAGAAATTTTCCGTACAACGATTGTAGCTCCATTTA 900
Query 901 TACAGAAAATTATTACACATGAAACATCAACGGATGCTGCTGGAACATCAGG-AGATGAA 959
| |||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 901 TTCAGAAAATTATTACACATGAAACAACAACGAATGCTGCTGGAACATC-GGAAGATGAA 959
Query 960 CTTGAAAACGATTACAAACAGATCAAGCATTTTATTGCTAAGGACTGTAAAATGCTGCTA 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTGAAAACGATTACAAGCAGATCAAGCATTTTATTGCTAAGGACTGTAAAATGCTGCTA 1019
Query 1020 GAAATATCTTCAACTGACAAATCGGGTTTACATGTCTTCGACTTCTTGGCAAATTCAATC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAATATCTTCAACTGACAAATCGGGTTTACATGTCTTCGACTTCTTGGCAAATTCAATC 1079
Query 1080 CTGAAAGAAGTTCTTTCGGCAATCCAGAAAGTCAAACCAGGAGCGTTTTCTCCTGGAAGG 1139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTGAAAGAAGTTCTTTGGGCAATCCAGAAAGTCAAACCAGGAGCGTTTTCTCCTGGAAGG 1139
Query 1140 CCTACTGAGTTCTTGAAGAATTACAAGGCAAGCTTGGATTTCCTGGCATATCTTGAAGGT 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCTACTGAGTTCTTAAAGAATTACAAGGCAAGCTTGGATTTCCTGGCATATCTTGAAGGT 1199
Query 1200 TATTGTCTGTCAAGGTCTGATGTAACTAAGTTCCGAGCTGAAGCTATATGCGTCGAATTC 1259
||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 TATTGTCCGTCAAGATCTGCTGTAACTAAGTTTCGAGCTGAAGCTATATGCGTCGAATTC 1259
Query 1260 ATGAAGCAATGGAATGTGGGCGTATATTTTTCACTGAGGTTTCAGGAGATAGCTGGAGCC 1319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATGAAGCAATGGAATGTGGGAGTATATTTTTCACTGAGGTTTCAGGAGATAGCTGGAGCC 1319
Query 1320 TTGGATTCTGCTCTTACTTCTTCTTCTCTGGTTTTCATTCAGGATTCAGATAAACG-GAG 1378
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1320 TTGGATTCTGCTCTTACTTCTCCTTCTCTGGTTTTCATTCAGGATTCAGATAAA-GAGAG 1378
Query 1379 TTCGCTCAACTTAATTCTCAGACAGAGTGATACTCTTTTGGAGTGCTTGCGATCGTGCTG 1438
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1379 TTCGCTCAACTTAATTCTCAGACAGAGTGATACTCTTTTGGAGTGCTTACGATCGTGCTG 1438
Query 1439 GAAAGAAGATGTTCTCGTTTTCTCGGCTGCTGATAAATTTCTTCGCTTGACCTTGCAGCT 1498
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAAAGAAGATGTTCTTGTTTTCTCGGCTGCTGATAAATTTCTTCGCTTGACCTTGCAGCT 1498
Query 1499 TCTTTCGAGATTTAGCATTTGGGTGTCATCTGCGCTGAATACTAGAAAGAGTAATGCCAG 1558
||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1499 TCTTTCGAGATATAGCTTTTGGGTGTCATCTGCGTTGAATAATAGAAAGAGTAATGCCAG 1558
Query 1559 CCCGAGTCCTGGATGTGAATGGGCAGTTTCAGCCACTGCAGAAGATTTTGTATATGTTAT 1618
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1559 CCCGAGTCCTGGATGTGAATGGGCTGTTTCAGCAACTGCAGAAGACTTTGTATATGTTAT 1618
Query 1619 ACATGATGTAAATTGTCTAGTCTCAGAAGTTTGCGGCGATTACCTTGGACATATATCACA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACATGATGTAAATTGTCTAGTCTCAGAAGTTTGCGGCGATTACCTTGGACATATATCACA 1678
Query 1679 GTATTTATCTTCATGCTCCACTGAAGTTCTTGATGTGGTGAAGATGAGCATAGAACAGGG 1738
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1679 GTATTTATCTTCAAGCTCCACTGAAGTTCTTGATGTGGTGAGGATCAGCATAGAACAGGG 1738
Query 1739 TGGGGCATCACTAGAGAAAGTCCTACCTTTAGTTACCAAGACAATAATTGACGTCATTGT 1798
||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1739 TGGGGTATCATTAGAGAAAGTCCTACCTTTACTTACCAAGACAATAATTGACGTCATTGT 1798
Query 1799 TGATAAATCTGTTGAGGACCTAAGGCAGCTCAAGGGAATAACTGCTACATATAGGATGAC 1858
|||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||
Sbjct 1799 TGATAAATCTGTTGAGGACCTAAGGCAGCTCAGGGGGATAACCGCTACATTTAGGATGAC 1858
Query 1859 TAATAAACCACTGCCTGTTAGGCACTCACCATACGTCGTCGGGCTATTGCGTCCTGTAAA 1918
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1859 TAATAAGCCACTGCCTGTTAGGCACTCACCATATGTCGTTGGGCTATTGCGTCCTGTAAA 1918
Query 1919 GGCTTTTTTGGAGGGAGATAAGGCTAGGCATTACTTGACACATGAAACAAGGGAGGCGTT 1978
||||||||||||||||||||||||||| | |||||||| || |||||| ||||| |||
Sbjct 1919 GGCTTTTTTGGAGGGAGATAAGGCTAGAAACTACTTGACCCAAAAAACAAAGGAGGAGTT 1978
Query 1979 ACTGCTTGGCACTGTCACTGAAATTACCAGGCGGTATTATGAATTAGCTGCTGAACTTGT 2038
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1979 ACTGCATGGCAGTGTCAGTGAAATTACCAGGCGGTATTATGAATTAGCTGCTGATGTTGT 2038
Query 2039 TAGCGTGGCAAGAAAAACAGAGTCATCGCTTCAGAAATTACGTCAAAATGCACAGAGACG 2098
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2039 TAGCGTGGCAAGAAAAACACAGTCATCGCTTCAGAAATTGCGTCAAAATGCACAGAGACG 2098
Query 2099 AGCAGGTGCAGCATCAGGTGTATCTGACCAAAATGTATCTGAAACAGACAAGATGTGTAT 2158
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2099 AGGAGGTGCAGCATCAGGTGTTTCTGATCAAAATGTATCTGAAACAGACAAGATGTGTAT 2158
Query 2159 GCAGTTGTTCCTTGATATTCAGGAGTATGGCCGAAACATTTCTGCACTGGGGCTGAAACC 2218
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 2159 GCAGTTGTTCCTTGATATTCAGGAGTATGGCCGAAACGTTTCTGCTTTGGGGCTGAAACC 2218
Query 2219 GGCAGATATCCCAGCTTATTGTTCCTTCTGGCAATGCGTTGCACCTGCGGATAGGCAAAA 2278
||| ||||| || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 GGCGGATATTCCGGAGTACTGTTCCTTCTGGCAATGCGTTGCACCTGCGGATAGGCAAAA 2278
Query 2279 CACAATTAGTGTTTGAGGAC 2298
| ||||||||||||||||||
Sbjct 2279 CTCAATTAGTGTTTGAGGAC 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119176093830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5