BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492356
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24820.1 | Symbols: | 26S proteasome, regulatory subunit Rp... 2084 0.0
> AT4G24820.1 | Symbols: | 26S proteasome, regulatory subunit
Rpn7;Proteasome component (PCI) domain | chr4:12790163-12792722
REVERSE LENGTH=1595
Length=1595
Score = 2084 bits (1128), Expect = 0.0
Identities = 1312/1398 (94%), Gaps = 23/1398 (2%)
Strand=Plus/Plus
Query 57 ctctctctctctcAGATCCGATTCAAGCTCTCCGATTTGCAATGGACGGTGGTGCGGAAG 116
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 83 CTCTCTCTCTCTCAGATCCGATTCAAGCTTTCCGATTTGCGATGGACGGTGGAGCGGAAG 142
Query 117 GATCTCAGCAGCCTCACCTGATTCTAGCCCACAAACTCTTCCTTCTCACTCATCCCGATG 176
||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||| ||||
Sbjct 143 GATCTCAGCAGCCTCACCTTATTCTAGCCAACAAGCTCTTCCTCCTCACTCATCCAGATG 202
Query 177 TCCCAGACATCGAGAAAGTCCAGCTCAAATCTGAGGTTTTGGATTTCATCAAATCCGATG 236
| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct 203 TTCCAGACATCGAGAAAGTCCAGCTCAAGTCTGAGGTTTTGGATTTCATCAGATCCCATG 262
Query 237 GTATGGCTCCCTTGTACGAAACCCTAACTGCCTCTTCGGTACTGGATTTGGATCAGAGCT 296
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 263 GTATGGCTCCTTTGTACGAAACCCTAATTGCCTCTTCGGTGCTGGATTTGGATCAAAGCT 322
Query 297 TGTTAGATTCTATGCGGGCAGCTAACGAAGAGGAGCTTAAGAAGCTCGACGAGAAGATTG 356
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 323 TGTTAGAGTCTATGCGGGCCGCTAATGAAGAGGAGCTTAAGAAGCTCGACGAGAAGATTG 382
Query 357 CAGATGCAGAAGAAAATTTGGGTGAAAGTGAAGTACGTGAAGCTCATCTTGCTAAGGCTC 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 383 CAGATGCAGAAGAAAATTTGGGTGAAAGTGAAGTTCGTGAAGCTCATCTTGCTAAGGCTC 442
Query 417 TGTATTTCATCAGGATTAGTGATAAGGAGAAAGCTTTGGAGCAGCTAAAACTCACTGAAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGTATTTCATCAGGATTAGTGATAAGGAGAAAGCTTTGGAGCAGCTAAAACTCACTGAAG 502
Query 477 GGAAAACTGTTGCTGTGGGGCAAAAAATGGACTTGGTATTCTACACATTGCAACTTGCCT 536
|||||||||||||||| || |||||||||||| |||| || || || || |||||||| |
Sbjct 503 GGAAAACTGTTGCTGTTGGACAAAAAATGGACGTGGTGTTTTATACGTTACAACTTGCTT 562
Query 537 TTTTCTATATGGACTTTGATCTGGTATCAAAGAGCATTGACAAAGCaaaaaaaTTGTTTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTTTCTATATGGACTTTGATCTGGTATCAAAGAGCATTGACAAAGCAAAAAAATTGTTTG 622
Query 597 AAGAGGGTGGTGACTGGGAGAGGAAGAACCGGCTAAAGGTCTATGAGGGTTTGTACTGCA 656
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 623 AAGAGGGTGGTGACTGGGAGAGGAAGAACCGGCTAAAGGTCTATGAAGGTTTGTACTGCA 682
Query 657 TGTCCACCAGAAATTTTAAGAAGGCTGCCAGCTTATTCCTGGATTCTATATCAACCTTCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TGTCCACCAGAAATTTTAAGAAGGCTGCCAGCTTATTCCTGGATTCTATATCAACCTTCA 742
Query 717 CAACATATGAAATTTTTCCATATGAGACCTTTATATTCTACACCGTCCTGACAAGCATCA 776
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 743 CAACATATGAAATTTTTCCATATGAGACCTTCATATTCTACACCGTCCTGACAAGCATCA 802
Query 777 TAACTTTGGACAGAGTTTCCCTCAAGCAAAAGGTCGTTGATGCACCTGAGATCTTAACCG 836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 803 TAACTTTGGACAGAGTTTCCCTTAAGCAAAAGGTCGTTGATGCACCTGAGATCTTAACCG 862
Query 837 TGCTTGGGAAGATTCCATTCCTTTCTGAGTTTCTGAACTCCTTGTATGAGTGCCAGTACA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGCTTGGGAAGATTCCATTCCTTTCTGAGTTTCTGAACTCCTTGTATGAGTGCCAGTACA 922
Query 897 AGGCGTTTTTCTCAGCATTTGCTGGAATGGCGGAGCAGATAAAGTTTGACCGTTACTTGT 956
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 923 AGGCGTTTTTCTCAGCATTTGCTGGAATGGCGGTGCAGATAAAGTATGACCGTTACTTGT 982
Query 957 ACCCACATTTCCGGTTCTACATGAGGGAAGTTAGAACGGTGGTTTACTCTCAGTTTTTGG 1016
|||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 983 ACCCGCATTTCCGGTTCTACATGAGGGAAGTCAGAACAGTGGTGTACTCTCAGTTTTTGG 1042
Query 1017 AATCTTACAAGAGTGTGACAGTTGAAGCGATGGCAAAGGCCTTTGGCGTTTCGGTGGATT 1076
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1043 AATCTTACAAAAGTGTGACAGTTGAAGCAATGGCAAAGGCCTTTGGCGTTTCTGTCGATT 1102
Query 1077 TCATTGATCAGGAGCTGTCACGCTTCATTGCTGCTGGGAAGCTTCACTGCAAGATAGACA 1136
|||| || |||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1103 TCATAGACCAGGAGTTGTCGCGCTTCATTGCTGCTGGGAAGCTTCACTGTAAGATAGACA 1162
Query 1137 AGGTTGCAGGTGTTCTGGAGACAAACCGTCCTGATGCAAAGAATGCACTTTACCAGGCAA 1196
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGGTTGCAGGTGTTTTGGAGACAAACCGTCCTGATGCAAAGAATGCACTTTACCAGGCAA 1222
Query 1197 CAATCAAGCAAGGGGATTTCTTGCTAAACCGAATCCAGAAGCTGTCTCGTGTGATCGATC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CAATCAAGCAAGGGGATTTCTTGCTAAACCGAATCCAGAAGCTGTCTCGTGTGATCGATC 1282
Query 1257 TGTGAGCATGCTACATGTTCCTGTTCCGCTCTTTCTTCAAGCTTTGCGACTTGGTAACTC 1316
||||||||||||||||||| ||||| | ||||||| ||||||||||| |||||| |||||
Sbjct 1283 TGTGAGCATGCTACATGTTTCTGTTTCACTCTTTCGTCAAGCTTTGCAACTTGGAAACTC 1342
Query 1317 AAAACGGTAGAAGCTTAAGGTCTGAGAAACGATAT-A--T--GAATCT--A-A--ACTT- 1365
|||||||||| |||||||||||||||||||||| | | | || | | | | |
Sbjct 1343 CGAACGGTAGAATCTTAAGGTCTGAGAAACGATATGAACTTTGGATTTTGAGATGAATGG 1402
Query 1366 -TG-AG--------ATGA--TCTAGTTGGTTTGTCAGTGGTGAATTTCCCAAGAACAAAG 1413
|| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CTGTAGTTTCTTTCATCAACTCTAGTTGGTTTGTCAGTGGTGAATTTCCCAAGAACAAAG 1462
Query 1414 AGCAAGCTTAATCTCCAA 1431
|||||| |||||||||||
Sbjct 1463 AGCAAGTTTAATCTCCAA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5