BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492357
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24810.2 | Symbols: | Protein kinase superfamily protein | ... 2479 0.0
AT5G50330.1 | Symbols: | Protein kinase superfamily protein | ... 1277 0.0
> AT4G24810.2 | Symbols: | Protein kinase superfamily protein
| chr4:12786627-12789713 REVERSE LENGTH=1725
Length=1725
Score = 2479 bits (1342), Expect = 0.0
Identities = 1527/1615 (95%), Gaps = 18/1615 (1%)
Strand=Plus/Plus
Query 29 AATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATGGATTCCGGCCTTG 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATGGATTCCGGCCTTG 174
Query 89 GCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGACATCTACACTGGATACAAGGTATT 148
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 175 GCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGTATT 234
Query 149 TCAACTTCGTATGAACTTCGTTAAGGATGTCAATAAGCACGAGGAAATGTGGGAGAGACA 208
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 235 TCAACTTCGTATGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGAGACA 294
Query 209 ACATGAACTTGCTGCTC-TCAAAATTTATTCTATGTGCTCTGACCTTGGTGGTTTCTTCC 267
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 ACATGAACTTGCTGCTCAT-AAAGTTTATTCTATGTGCTCTGACCTTGGTGGTTTCTTCC 353
Query 268 TTAAGATTGCACAAATTCTAGGTAAACCTGACTTGGCTCCAGCTGCGTGGGTTAGAAAAC 327
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 354 TTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAGAAAAC 413
Query 328 TCGTCACTTTGTGTGATCATGCTCCTGCCACATCATTTGATGCCATTCGAGTTGTCCTTG 387
||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
Sbjct 414 TCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTGTCCTGG 473
Query 388 AGAAAGAGTTAGGTAAAAGCCTCGAAGATGTGTTTGAAACATTTGATGAGAAGCCTCTTG 447
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 474 AGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGCCTCTTG 533
Query 448 GCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAAGGTGACAAGAGGGATGTTG 507
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 GCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGGATGTTG 593
Query 508 TTGTAAAGGTCCAACATCCTGGCGTTGAGAAATTGATGATGGTAGATATCAGAAACTTGC 567
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 594 TTGTAAAGGTCCAACATCCTGGCGTTGAGAAGTTGATGATGGTTGATATCAGAAACTTGC 653
Query 568 AAGTATTTGCATTATACATGCAGAAAACTGATATTAAATTTGACTTGTTCTCCATGACAA 627
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 654 AAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTGTTCTCCATGACAA 713
Query 628 AAGAAATCGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCTATGG 687
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 AGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCAATGG 773
Query 688 AAAAGATCCGACGTTTTCTTTATGATAACAATAGAAAGAGTCCTGTCCTGGTTCCCAGGG 747
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 774 AGAAGATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGGTTCCCAGGG 833
Query 748 TGCTTCCAAATTTGGTGACTAGAAAGGTACTGGTGATGG-ATTACATGAACGGAATCCCA 806
|| |||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||
Sbjct 834 TGTTTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATT-CATGAACGGAATCCCG 892
Query 807 ATCTTGAGCCTCGGTGATGAGATGGCCAAAAGAGGGATAAATCCTCATGGTAAAATGGCA 866
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 893 ATCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGGTAAAATGGCA 952
Query 867 GAGGCGGCAAAATTCAATATACTAAACAGTTTGTCCCAAGCATATGGCCAAATGATACTG 926
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 953 GAGGCAGCAAAATTCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTG 1012
Query 927 AAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTTCTAAAGGTTCA 986
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1013 AAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCA 1072
Query 987 GAGGTTGCACTGTTGGACTATGGACAAGTGAAGGAACTCCCTGACCACCTGAGACTTGGT 1046
|||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1073 GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACTCCCTGACCACCTGAGACTTGGT 1132
Query 1047 TATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCCTCATTGGCATTACAGAGCTTT 1106
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1133 TATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGCGTTACAGAGCTTT 1192
Query 1107 AGGGAACTTGGCATAGCTACAGTCGCCAAGTGTAAGAATGAGCAACAAGAGCTTCTCCAG 1166
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGGGAACTTGGTATAGCTACAGTAGCCAAGTGTAAGAATGAGCAACAAGAGCTTCTCCAG 1252
Query 1167 TTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTACGACAACTCTGCAACCTTTC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTACGACAACTCTGCAACCTTTC 1312
Query 1227 TCAGTTGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAGAGGAGCTTTTCTCT 1286
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1313 TCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAGAGGAACTCTTCTCT 1372
Query 1287 GTTCTTCGCACGGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATAGGGATTAATTACTCC 1346
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1373 GTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATTGGCATTAATTACTCC 1432
Query 1347 TGCGCTCAACACTGGAGGTCTATGGCAGAAGAGGCTTTGCTTGCATCTGGAAGACTCTCA 1406
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1433 TGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCATGCATCTGGAAGACTCTCA 1492
Query 1407 ACAGGTAGAAAGCAGAAGCGTCGATGTAGTTCTCTGAGAAGGCTATACCCAGGGCGAAAA 1466
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1493 ACAGGTAGAAAGCAGAAGCGTCGATGTAGTTCTCTTAGAAGGCTATACCCAGGGCCAAGA 1552
Query 1467 GAGAGTTAATCATTTCACCAGTCTCTTGCAAATGATTCAATCTTCAGTCC--A-TCTTTA 1523
|||||||||| | || || | |||||||||||||| | ||| ||||| | ||||||
Sbjct 1553 GAGAGTTAATAAAATCCCCTGCCTCTTGCAAATGATGC--TCT-CAGTCTTTAGTCTTTA 1609
Query 1524 CATTATTTTCTGGATACAGCTAAGGCAGCAAGTTGTCTCTTATCTTAATCGGTTTAGTTA 1583
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1610 CATTATTTTCTGGATACAGCTAAGGCAGCAAGTTGTCTCTTACCTTAACCGGTTTAGTTG 1669
Query 1584 GTTTG---C----A-TAGTGAGTACACCTTTATAAAAGTTTTGTCATTATAATGT 1630
||||| | | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1670 GTTTGAAACTTTGACTAGTGAGTACATCTTTATAAAAGTTTTGTCATTATAATGT 1724
> AT5G50330.1 | Symbols: | Protein kinase superfamily protein
| chr5:20485223-20488684 REVERSE LENGTH=1744
Length=1744
Score = 1277 bits (691), Expect = 0.0
Identities = 1163/1390 (84%), Gaps = 36/1390 (3%)
Strand=Plus/Plus
Query 29 AATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATGGATTCCGGCCTTG 88
|||||||| | |||||||||||||||| ||||||||| |||| ||| | || || || ||
Sbjct 121 AATGCATGGGTTCGATTTCAAAGAGATCCAGGAGAAGATCTCCGATAGCTTTCGTCCATG 180
Query 89 GCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGACATCTACACTGGATACAAGGTATT 148
|||||| || ||||| ||||||| ||| || ||| | |||||||| || |||||||| ||
Sbjct 181 GCAACGCTCTTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGTGTT 240
Query 149 TCAACTTCGTATG-AA-CTTCGTTAAGGATGTC-AATAAGCACGAGGAAATGTGGGAGAG 205
||||||||| | | || || || || |||| | || ||||| |||||||||||||| ||
Sbjct 241 TCAACTTCG-A-GTAAGTTTAGTAAAAGATG-CAAAGAAGCAAGAGGAAATGTGGGAAAG 297
Query 206 ACAACATGAACTTGCTGCT-CTCAAAATTTA-TTCTATGTGCTCTGACCTTGGTGGTTTC 263
||||||||||| |||||| | || ||||| ||| ||||||||||| ||||||||||||
Sbjct 298 ACAACATGAACAAGCTGCTGAT-AAGATTTACTTC-ATGTGCTCTGATCTTGGTGGTTTC 355
Query 264 TTCCTTAAGATTGCACAAATTCTAGGTAAACCTGACTTGGCTCCAGCTGCGTGGGTTAGA 323
|||||||||||||| ||| || ||| ||||||||| |||| |||||||||||||| | |
Sbjct 356 TTCCTTAAGATTGCTCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCGTGGGTGA-A 414
Query 324 AAA-CTCGTCACTTTGTGTGATCATGCTCCTGCCACATCATTTGATGCCATTCGAGTTGT 382
||| || ||||||||||||||||| |||||||| || | |||||||| |||| | ||||
Sbjct 415 AAAGCTTGTCACTTTGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCGATTCAACTTGT 474
Query 383 CCTTGAGAAAGAGTTAGGTAAAAGCCTCGAAGATGTGTTTGAAACATTTGATGAGAAGCC 442
|| ||||| ||||||||||||||| | | || | |||||||| |||||||| |||||
Sbjct 475 TCTAGAGAAGGAGTTAGGTAAAAGCATTGGTGAAATCTTTGAAACGTTTGATGAAAAGCC 534
Query 443 TCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAAGGTGACAAGAGGGA 502
|||||| |||||||||||||||||||| || |||||| |||||| ||| |||||| | |
Sbjct 535 TCTTGGTTCTGCTTCTATTGCTCAGGTTCATAGAGCAATAGTAAAGGGTAACAAGATGAA 594
Query 503 TGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAA-ATTGATGATGGTAGATATCAGAA 561
||||||||||||||| |||||||||||| |||| || |||||||||| ||| || ||||
Sbjct 595 TGTTGTTGTAAAGGTTCAACATCCTGGCATTGA-AAGATTGATGATGACAGACATAAGAA 653
Query 562 ACTTGCAAGTATTTGCATTATACATGCAGAAAACTGATATTAAATTTGACTTG-TTCTCC 620
|||||||| |||| || ||||||||||||| ||| ||||| ||||||||| || | |||
Sbjct 654 ACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCAT-TCC 712
Query 621 ATGACAAAAGAAATCGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAAT 680
|| ||||| ||||| ||||| |||||||| |||||||| ||||| |||||||||||||||
Sbjct 713 ATAACAAAGGAAATGGAGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAAT 772
Query 681 GCTATGGAAAAG-ATCCGACGTTTTCTTTATGATAACAATAGAAAGAGTCCTGTCCTGGT 739
|| |||| |||| || ||| ||||||||||||| ||||| | |||| |||||| ||||
Sbjct 773 GCAATGG-AAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGT 831
Query 740 TCCCAGGGTGCTTCCAAATTTGGTGACT-AGAAAGGTACTGGTGATGGATTACATGAACG 798
|| || || || | | || |||||||| || | ||| |||||||||| ||||| || |
Sbjct 832 ACCAAGAGTTCTGCGAGATATGGTGACTAAG-AGGGTTTTGGTGATGGAATACATTAATG 890
Query 799 GAATCCCAATCTTGAGCCTCGGTGATGAGATGGCCAAAAGAGGGATAAATCCTCATGGTA 858
|||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 891 GAATTCCAATCCTGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTA 950
Query 859 AAATGGCAGAGGCGGCAAAATTCAATATACTAAACAGTTTGTCCCAAGCATATGGCCAAA 918
| || |||||||| ||||| ||||||||| |||||||| |||| || ||||||||||
Sbjct 951 AGATTGCAGAGGCAGCAAAGCACAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAA 1010
Query 919 TGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTT-CT 977
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1011 TGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGC- 1069
Query 978 AAAGGTTCA-GAGGTTGCACTGTTGGACTATGGACAAGTGAAGGAACT-CCCTGACCACC 1035
|||||| || ||||||||| || |||||||||| |||||||||||||| ||| || |
Sbjct 1070 AAAGGT-CAAGAGGTTGCATTGCTGGACTATGGTCAAGTGAAGGAACTACCCA-ACAAGT 1127
Query 1036 TGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCCTCATTG-GCA 1094
||||||||||||||||||||||||| |||||||| |||||||||||||| ||| | | |
Sbjct 1128 TGAGACTTGGTTATGCAAATTTGGTCATTGCCATGGCTGATAACAATGCTTCAC-GAGTA 1186
Query 1095 TTACAGAGCTTTAGGGAACTTGGCATAGC-TACAGTCGCCAAGTGTAAGAATGAGCAACA 1153
| |||||||||| ||||| | || || | |||||| ||||||||| |||||||||| ||
Sbjct 1187 TCACAGAGCTTTTGGGAAATGGGTTTA-CATACAGTGGCCAAGTGTGAGAATGAGCAGCA 1245
Query 1154 AGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGT-ACGACAA 1212
||| ||||| | ||||||| ||||| | || || ||| |||||||| ||||| | ||||
Sbjct 1246 AGAACTTCTGCGGTTAGCACAAACACTTTTTGATACAAAGATGCCTACTGGTCA-GACAG 1304
Query 1213 CTCTGCAACCTTTCTCAGTTGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAG 1272
| | ||||||||||||| |||||||||||| |||||||| | |||||| |||||||||
Sbjct 1305 TTTTACAACCTTTCTCAGATGACTCTTCGATTAAAAAGATAGCCGTTGAGACATTTCCAG 1364
Query 1273 AGGAGCTTTTCTCTGTTCTTCGCACGGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATAG 1332
|||| || |||||||| |||||||| || |||||||||||||||||||| || ||||| |
Sbjct 1365 AGGAACTGTTCTCTGTACTTCGCACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGAT-G 1423
Query 1333 GGA-TTAATTACTCCTGCGCTCAACACTGGAG-GTCTATGGCAGAAGAGGCTTTGCTTGC 1390
||| ||||||| || || || |||| ||||| | | ||||| ||||||||||| |||||
Sbjct 1424 GGAGTTAATTATTCGTGTGCAGAACAATGGAGAG-CAATGGCCGAAGAGGCTTTACTTGC 1482
Query 1391 ATCTGGAAGA 1400
||||||||||
Sbjct 1483 ATCTGGAAGA 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80521674180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5