BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492364
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24780.1 | Symbols: | Pectin lyase-like superfamily protein... 2455 0.0
AT1G14420.1 | Symbols: AT59 | Pectate lyase family protein | ch... 93.5 6e-18
> AT4G24780.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:12770331-12772333 REVERSE LENGTH=1633
Length=1633
Score = 2455 bits (1329), Expect = 0.0
Identities = 1495/1572 (95%), Gaps = 24/1572 (2%)
Strand=Plus/Plus
Query 1 AGAGAGACAGTACTGTAATCCAAGTGAGAGAGAAAGAAAAATGAAAATGCAGACGAATAA 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 67 AGAGAGACAGTACTGTAATCCAAGTGAGAGAGAGAGAGAAATGAAAATGCAGACGAAGAA 126
Query 61 GCTCTTTATCACCATTGTCTCCTTTCTTCTCTACGCTCCATTGTTCCTATCTTCACCAGT 120
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 127 GCTCTTTATCACCATTGTCTCCTTTCTTCTCTATGCTCCATTGTTCTTATCTTCACCAGT 186
Query 121 TCCAGACCCAGAATCTGTTGTTGAAGAAGTTCACAAGAGCATTAATGCGTCGGTTGCAGG 180
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCCTGACCCTGAATCTGTCGTTGAAGAAGTTCACAAGAGCATTAATGCGTCGGTTGCAGG 246
Query 181 AAGAAGGAAGTTAGGTTATCTCTCATGTACCACCGGTAACCCAATCGACGACTGTTGGCG 240
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 247 AAGAAGGAAGTTAGGTTACCTCTCATGTACGACCGGTAACCCAATCGACGACTGTTGGCG 306
Query 241 ATGTGACCCACACTGGGAGCAGCACCGTCAACGTCTCGCCGACTGCGCCATTGGGTTCGG 300
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 307 TTGTGACCCTCACTGGGAGCAACACCGTCAACGTCTCGCTGACTGCGCCATTGGATTCGG 366
Query 301 CAAAAACGCCATCGGTGGCCGTGACGGTCGGATCTACGTGGTCACCGACTCAGGAAACGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CAAAAACGCCATCGGTGGCCGTGACGGTCGGATCTACGTGGTCACCGACTCAGGAAACGA 426
Query 361 CAACCCAGTTAGCCCCAAGCCCGGAACTTTAAGACACGCCGTGATCCAAGACGAGCCACT 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 427 CAACCCAGTTAGCCCCAAGCCCGGAACTTTAAGACACGCCGTGGTCCAAGACGAGCCACT 486
Query 421 CTGGATCATCTTCCAACGAGACATGACGATTCAGCTCAAAGAAGAGCTAATCATGAACTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTGGATCATCTTCCAACGAGACATGACGATTCAGCTCAAAGAAGAGCTAATCATGAACTC 546
Query 481 TTTCAAGACCATTGATGGTCGTGGAGCTTCCGTACACATTTCTGGTGGGCCTTGTATAAC 540
||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 547 ATTCAAGACCATCGATGGCCGTGGTGCTTCCGTACACATCTCTGGTGGGCCTTGTATAAC 606
Query 541 GATCCAGTACGTGACCAACATTATCATCCATGGGATTCATATCCATGATTGCAAGCAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GATCCAGTACGTGACCAACATTATCATCCATGGGATTCATATCCATGATTGCAAGCAAGG 666
Query 601 TGGGAACGCTATGGTGCGGAGCTCCCCACGGCACTTCGGATGGAGAACGATATCGGACGG 660
||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 667 TGGCAACGCTATGGTGCGGAGCTCTCCACGGCATTTCGGGTGGAGAACGATATCGGACGG 726
Query 661 TGACGGTGTCTCTATCTTTGGTGGAAGTCATGTTTGGGTTGACCATTGTTCGTTCTCTAA 720
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGATGGTGTCTCTATCTTTGGAGGAAGTCATGTTTGGGTTGACCATTGTTCGTTCTCTAA 786
Query 721 TTGTGAAGATGGACTCATTGATGCTATAATGGGCTCAACGGCTATCACTTTGTCTAACAA 780
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 787 CTGTGAAGATGGACTTATTGATGCTATCATGGGCTCGACGGCTATCACTTTGTCTAACAA 846
Query 781 TCACATGACACATCATGATAAGGTCATGTTGCTTGGTCATAGTGATACTTACAGTCGTGA 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCATATGACACATCATGATAAGGTCATGTTGCTTGGTCATAGTGATACTTACAGTCGTGA 906
Query 841 CAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAAGGCCTTGTCCAAAGAAT 900
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGCCTTGTCCAAAGAAT 966
Query 901 GCCCAGGTGTAGACATGGGTACTTCCATGTGGTGAACAATGACTACACACATTGGGAGAT 960
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GCCCAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGACTACACACATTGGGAGAT 1026
Query 961 GTATGCGATTGGAGGAAGTGCTAATCCTACAATCAATAGTCAAGGGAACAGATTTTTGGC 1020
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTATGCGATTGGTGGAAGTGCTAATCCTACAATCAATAGTCAAGGGAACAGATTTTTGGC 1086
Query 1021 CCCCAATATCAGATTTAGCAAAGAAGTGACTAAGCATGAGGACGCGCCTGAGAGCGAGTG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 ACCCAATATCAGATTTAGCAAAGAAGTGACTAAGCATGAGGACGCGCCTGAGAGCGAGTG 1146
Query 1081 GAAGAGATGGAATTGGAGATCTTCCGGAGATTTGTTGCTAAACGGTGCGTTTTTTACTCC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GAAGAGATGGAATTGGAGATCTTCCGGAGATTTGTTGCTAAACGGTGCGTTTTTTACTCC 1206
Query 1141 GTCTGGTGGTGCAACCTCGTCTAGCTATGCCAAGGCTTCGAGCCTTGGGGCTAAACCGTC 1200
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1207 GTCTGGTGGTGCAGCCTCGTCTAGCTATGCAAAGGCTTCGAGCCTTGGGGCTAAACCGTC 1266
Query 1201 ATCTCTAGTTGGACCATTAACGTCTACTTCTGGTGCACTGAATTGCCGTAAGGGGTCTCG 1260
||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 1267 TTCTCTAGTTGGACCATTGACGTCTACTTCTGGTGCACTGAATTGCCGTAAAGGTTCCCG 1326
Query 1261 TTGCTGATTGTGGCTTAGTGGTCGCACTTAAGTTTTTACCCAATTTATAATTATATAGGA 1320
||||||||||||||||||||||| ||||||||||||||||| ||| || | ||||||||
Sbjct 1327 TTGCTGATTGTGGCTTAGTGGTCACACTTAAGTTTTTACCCCATT-AT--T-ATATAGGA 1382
Query 1321 AAAGGCAATTAAAGCCACCAATTAAGGGGGATC---T--T-T-------CTTT---A-TC 1363
|||||||||||||||||||||||||||||||| | | | |||| | ||
Sbjct 1383 AAAGGCAATTAAAGCCACCAATTAAGGGGGATTAAGTAGTGTAGTAAGACTTTCTTAATC 1442
Query 1364 CCTTGATTTACTCTCttttttttCTTTCTTTATTTGGGTAAAACTGAAGGAGAATACAAC 1423
|||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||||
Sbjct 1443 CCTTGATTTACTCT-TTTTTTTG-TTTGTTTATTCGGGTAAAATTGAAGGAGAATACAAC 1500
Query 1424 CTCTGGCTTGCTGCTCT-TAGGAGCCTTCTTAAGGATTCTCTGTTTTAAGGAATCTTTAA 1482
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1501 CTCTGGCTAGCTGCTCTCTAGGACCCTTCTTAAGGATTCTCTGTTTTAAGGAATCTTTAA 1560
Query 1483 ATTAGGTTAAAGTGTGGGAACAAGTGCAGATGTGTTGATCTTGATATTAATATAAATATA 1542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ATTAGGTTAAAGTGTGGGAACAAGTGCAGATGTGTTGATCTTGATATTAATATAAATATG 1620
Query 1543 ATTTTGTGTCTT 1554
||||||||||||
Sbjct 1621 ATTTTGTGTCTT 1632
> AT1G14420.1 | Symbols: AT59 | Pectate lyase family protein |
chr1:4931566-4933515 REVERSE LENGTH=1768
Length=1768
Score = 93.5 bits (50), Expect = 6e-18
Identities = 135/174 (78%), Gaps = 14/174 (8%)
Strand=Plus/Plus
Query 839 GACAAGAATATGCAAG-TCACCATTGCTTTTAACCATTTTGGTGAAGGC-CTT-GTCCAA 895
|||||||| |||| || | || |||| |||||||| || ||| || || || | ||
Sbjct 1044 GACAAGAAAATGC-AGATAACGGTTGCGTTTAACCACTTCGGT-AA-GCGATTGGAACAG 1100
Query 896 AGAATGCC-CAGGTGTAGACATGGGTAC-TTCCATGTGGTGAACAATGACTACACACATT 953
|||||||| | | || ||| | || || | ||||||||||||||||||||||||||||
Sbjct 1101 AGAATGCCTC-GTTGCAGATA-CGGAACGATACATGTGGTGAACAATGACTACACACATT 1158
Query 954 GGGAGATGTATGCGATTGGAGG-AAG-TGCTAATCCTACAATCAATAGTCAAGG 1005
|||| |||||||| ||||| || || || || |||||||| | |||||||||
Sbjct 1159 GGGAAATGTATGCAATTGGTGGGAACATG--AACCCTACAATTATTAGTCAAGG 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5