BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492366
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24760.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2331 0.0
> AT4G24760.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:12761283-12763781 REVERSE LENGTH=1514
Length=1514
Score = 2331 bits (1262), Expect = 0.0
Identities = 1390/1451 (96%), Gaps = 12/1451 (1%)
Strand=Plus/Plus
Query 1 TAAGGAATGTTTCCTCGCAATCATCATCATCATCACCATCTTCGTCTTCTTCTTTGAATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 69 TAAGGAATGTTTCCTCGCAATCATCATCATCATCACCATCTTCGTCTTCTTCTTTGAAAC 128
Query 61 CTCCAGCGACTTCCTCCTAG-T-TCTCACTTATACACTTACTAATACAGAGTGACagaga 118
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 129 CTCCAGCGACTTCCTCGTAGTTCTCTCACTTATACACTTACTAATACAGAGTAACAGAGA 188
Query 119 gagagagagTGGACTCTTTCTTAGAG-AAGATGGGAGGTGTGACTTCTTCAATGGCGGCG 177
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 189 GAGACAGAGTGGACTC-TTCTTAGAGTAAGATGGGAGGTGTGACTTCTTCAATGGCGGCG 247
Query 178 AAGTTGGCGTTTTTTCCTCCGAATCCGCCGTCGTACAAGCTGGTCAGGGATGAAGCAACG 237
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 248 AAGTTGGCGTTTTTTCCTCCGAATCCGCCGTCGTACAAGCTGGTCAGAGATGAAACAACG 307
Query 238 GAGCTATTTCTCATGGA-CCCTTTTCCCCATCGAGAAAATGTCGACATTTTGCGGCTGCC 296
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAGCTTTTTCTAAT-GAGCCCTTTTCCCCATCGAGAAAATGTCGACATTTTGCGGCTGCC 366
Query 297 CACGCGCCGAGGCACCGAAATCGTGGCTATGTACATCAGATACCCTATGGCCGTCACTAC 356
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 367 CACGCGCCGAGGCACCGAAATCGTGGCCATGTACATCAGATACCCAATGGCCGTCACCAC 426
Query 357 TCTTCTCTATTCACATGGAAATGCTGCCGACATCGGTCAGATGTATGAGCTCTTCATCGA 416
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CCTTCTCTACTCTCATGGAAATGCTGCCGACATCGGTCAGATGTATGAGCTCTTCATCGA 486
Query 417 GCTCAGTATTCATCTCCGCGTCAATTTGATGGGGTATGACTATTCAGGGTATGGTCAATC 476
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 487 GCTCAGTATTCACCTCCGCGTCAATTTGATGGGGTATGACTATTCAGGGTATGGCCAATC 546
Query 477 ATCAGGGAAGCCCACAGAACAAAACACTTATGCTGATATCGAGGCTGCTTACAAATGTCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATCAGGGAAGCCCACAGAACAAAACACTTATGCTGATATCGAGGCTGCTTACAAATGTCT 606
Query 537 GGAAGAGAATTATGGGGCAAAGCAGGAGAACATTATCCTATATGGTCAATCTGTCGGTAG 596
|||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 607 GGAAGAGAATTATGGGGCTAAGCAGGAGAACATTATTCTCTATGGTCAATCTGTTGGTAG 666
Query 597 TGGTCCAACCGTCGACCTAGCTGCACGTTTGCCTCGACTAAGAGCTTCCATTCTTCATAG 656
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 667 TGGTCCAACCGTGGACCTAGCTGCTCGTTTGCCTCGACTAAGAGCTTCCATTCTTCATAG 726
Query 657 TCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACAT 786
Query 717 ATACAAGAACATTGACAAAATTACGCTGGTGAGGTGTCCTGTCCTCGTGATTCATGGAAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATACAAGAACATTGACAAAATTACGCTGGTGAGGTGTCCTGTCCTCGTGATTCATGGAAC 846
Query 777 AGCGGATGATGTGGTTGACTTCTCACATGGGAAGCAGCTTTGGGAACTCTGCCAAGAGAA 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 847 AGCGGATGATGTGGTTGACTTCTCTCATGGGAAGCAGCTTTGGGAACTCTGCCAAGAGAA 906
Query 837 ATATGAACCACTATGGCTCAAAGGTGGAAACCATTGTGATCTTGAACTCTTTCCCGAATA 896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ATATGAACCGCTATGGCTCAAAGGTGGAAACCATTGTGATCTTGAACTCTTTCCCGAATA 966
Query 897 CATTGGCCATCTCAAGAAGTTTGTGAGCGCTGTGGAGAAATCTGCATCGAAAAGAAACAG 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CATAGGCCATCTCAAGAAGTTTGTGAGCGCTGTGGAGAAATCTGCATCGAAAAGAAACAG 1026
Query 957 TTCTTTCTCAAGAAGAAGCATGGAAGGGTGCGAACAACCTCCTCGGCATAGTGTAGATGC 1016
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1027 TTCTTTCTCAAGAAGAAGCATGGAAGGGTGTGAACAACCTCCTCGTCATAGTGTAGATGC 1086
Query 1017 CCCAAGGAAAAGCAAGGATGGGCGAGAAAAACCGAGGAAAAGCATAGACAGATTAAGGTT 1076
|||||||| || ||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1087 TCCAAGGAAGAGTAAGGACGGACGAGAAAAACCGAGGAAAAGCATAGACAGACTAAGGTT 1146
Query 1077 TCAGGGATACAAGTTGAGCCACATAGAGAAACCAGAGAAGCTGAAGGTTCCATTTGAGGA 1136
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1147 CCAGGGATACAAGTTGAGCCACATAGAGAAACCGGAGAAGCTGAAGGTTCCATTTGAAGA 1206
Query 1137 AATGGAGAGGTCGAGGAGAAGCGTGGACATATACAGAGACAAGTCTCAGCCGATGGAGAG 1196
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1207 AATGGAGAGGTCAAGGAGAAGCGTGGACATATACAGAGATAAGTCTCAGCCGATGGAGAG 1266
Query 1197 AGCGCGTAAGAGTGTGGATTGGTTGGACAGAAGTCGAGCTACCGAATGAAAAA--ATGGG 1254
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1267 AGCACGTAAGAGTGTGGATTGGTTGGACAGAAGTCGAGCTACCGAATGAAAATGGA-GGG 1325
Query 1255 ATTTGATGTCAAAAGATTGTATTTGAGTGTCGTTCAATTTATTGGGGTGTGTGTTTGTAT 1314
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1326 -TTTGATGTCAAAAGATTGTATTTGAGTGTCGTTCAATTTATTGGGGTATGTGTTTGTAT 1384
Query 1315 TGTAGTTTGTATGTCAAGTTAAGATACAACACAGAAAATAGATTTAAACAAAGTCGG-TA 1373
||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| | ||
Sbjct 1385 TGTAGTTTGTATGCCAAGTTAAAATACAACAG-GAAGATAGATTTAAACAAAGTATGATA 1443
Query 1374 ACTTGTCTGACTGTTTCCCACACGACACTTTAGACTGGTTTTTAGTTTATTTGACAAGAT 1433
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1444 ACTTGTCTGACTGTTTCCCACACGACACTTTTGACTGGTTTTTAGTTTATTTGACAAGAT 1503
Query 1434 TCGTGTGATGT 1444
||||||| |||
Sbjct 1504 TCGTGTGCTGT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5