BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492367
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24750.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1753 0.0
> AT4G24750.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr4:12758214-12760908 REVERSE LENGTH=1246
Length=1246
Score = 1753 bits (949), Expect = 0.0
Identities = 1105/1177 (94%), Gaps = 23/1177 (2%)
Strand=Plus/Plus
Query 1 AAAGACTGCTTCCATGAAGCCAAAACTGATAATCGGTCCAATAATAACTCGAAAGTGACT 60
|||||||||||| ||||||||||||| | | ||| |||||||||||| |||||
Sbjct 14 AAAGACTGCTTCAATGAAGCCAAAAC---T-A----TCC---AATAACTCGAAATTGACT 62
Query 61 ACTCTTTTATTTTGTCTCT-CTGTTGATGCGCAAACGCGAAGA-T-T--ATCTTCTCAGT 115
|||||||| |||||||||| ||||||| |||||| ||||||| | | |||||||||||
Sbjct 63 ACTCTTTTCTTTTGTCTCTGTTGTTGATTCGCAAAGGCGAAGATTATCCATCTTCTCAGT 122
Query 116 TACTACTACTGGAATTAAAAGCTTAGAAGAACTTGAAACATGGAGTCTCTATCTCTTCCT 175
|||| ||||||||| ||||||| || | | ||| ||||||||||||||||||||||||
Sbjct 123 TACTCCTACTGGAACCAAAAGCTCAG-A-ACCTTAAAACATGGAGTCTCTATCTCTTCCC 180
Query 176 GTTCTAAATCCTCTATTAGCTTCTAGTTCTAATCTGTTCAGAAACCAG-AGCTCGAGGAT 234
|||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||||||
Sbjct 181 GTTCTAAATCCTCTGTTAGCTTCTGGTTCTAATCTTTTTAGAAACCAGCA-CTCGAGGAT 239
Query 235 GACCTCTTCAATGGTATCTTCACTTAAACCCCCCTTTGGAGGCACATCCCTTTCCACAGT 294
|||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||| ||
Sbjct 240 GACCTCTTCAATGGTATCTTCACTTAAATCCCCCATTGGAGGCACATCGCTCTCCACTGT 299
Query 295 TCGCCGCTTTAGAGTAGGAGTTGTTAGGATGCAAGCTGTTGATGAAGATATTGATCTGAA 354
||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TCGTCGCTTTGGAGTAGGTGTTGTTAGGATGCAAGCTGTTGATGAAGATATTGATTTGAA 359
Query 355 GCAAATGAGAGACATGGCTGCTGCTAAAAAGCGTTGGGATGGTTTGTTAAGGGAAGGAAA 414
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAAATGAGAGACATAGCTGCTGCTAAAAAGCGTTGGGATGGTTTGTTAAGGGAAGGAAA 419
Query 415 AGTGAAGCTTCTTACACCAAGAGAAGCAGGGTATGCTATTTCTCTTTCAAACAAACCTCT 474
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 AGTGAAGCTTCTTACACCAAGAGAAGCAGGCTATGCTATTTCTCTTTCAAACAAACCTCT 479
Query 475 ACTTGATGTCCGCCCCTCTAGCGAGCGCAACAAGGCATGGGTTAAAGGCTCCACCTGGGT 534
|||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 480 CCTTGATGTTCGTCCCTCTAGCGAGCGCAACAAGGCATGGATTAAAGGCTCCACTTGGGT 539
Query 535 TCCTATCTTCGACAATGATGACAACCTTGACGCTGGAACTCTTTCCAAAAAAGTCACTAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCTATCTTCGACAATGATGACAACCTTGACGCTGGAACTCTTTCCAAAAAAGTCACTAG 599
Query 595 TTTTGCTATGGGGGGATGGTGGAGTGGAGCACCTACATTATCTTTTAATAGGCTCTTCTT 654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 TTTTGCTATGGGGGGATGGTGGAGTGGAGCACCTACACTATCTTTTAATAGGCTCTTCTT 659
Query 655 GTCAAAGGTTGAGGAGAAATTCCCAAAAGACTCAGAGCTGATTGTTGCTTGCCAAAAAGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCAAAGGTTGAGGAGAAATTCCCAAAAGACTCAGAGCTGATTGTTGCTTGCCAAAAAGG 719
Query 715 ATTGAGATCCTTAGCTGCTTGTGAGCTACTATATAATGCAGGGTATGAGAATCTGTTCTG 774
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTGAGATCCTTAGCTGCTTGCGAGCTACTATATAATGCAGGGTATGAGAATCTGTTCTG 779
Query 775 GGTACAAGGTGGTTTAGAATCTGCTCAAGACGAGGATCTAGTGACAGAAGGTGTTCAACC 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GGTACAAGGTGGTTTAGAATCTGCTCAAGACGAGGATCTAGTGACAGAAGGTGTCCAACC 839
Query 835 CTTGAAGCTTGCTGGGATTGGAGGTTTTTCAGAGTTCCTTGGTTGGACAGACCAGCAAAG 894
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CTTGAAGCTTGCTGGTATTGGAGGTTTTTCAGAGTTCCTCGGTTGGACAGACCAGCAAAG 899
Query 895 AGCTCAAGCTGCGAAAGAAGGTTGGGGGTACCGTTTAGTATATACTGCTCGTCTGTTTGG 954
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 AGCTCAAGCTGCGAAAGAAGGTTGGGGGTACCGTTTGGTATATACTGCTCGTCTGTTTGG 959
Query 955 AGTTGTTCTGGCTGCTGATGCCTTGTTCGTTGGTGCTCAGCAACTAGGCCATTATATTCA 1014
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 960 AGTTGTTCTGGCTGCTGATGCTTTGTTCGTTGGGGCTCAGCAACTAGGCCATTATATTCA 1019
Query 1015 GGAGTTAAGAGGCCATTAGTACCTCTCTTTAACCAAGCTCCAAGTGGCTATATTTCTATT 1074
||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 1020 GGAGTTAAGAGGCCATTAGGATCTCTCTTTAACCACGCTCCAAGTGGCTATATTTCTCTT 1079
Query 1075 Caa-aaaaaaGAAATTGAAAAGTTTTGGAAGGTAGAGTAGTTGAAATAGTTAAAAAAGAC 1133
||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1080 CAACAAAAAA-AAATTGAAAAGTTTTGGAAGGTAGAGTAGTTGAAATAGATCAAAAATAC 1138
Query 1134 ATCTTTGAATCCTTGAAATTCCAATGGCAAAGTTACC 1170
||||||||||||| ||||||||||||||||| |||||
Sbjct 1139 ATCTTTGAATCCT-GAAATTCCAATGGCAAACTTACC 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5