BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492370
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24730.1 | Symbols: | Calcineurin-like metallo-phosphoester... 1404 0.0
> AT4G24730.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr4:12749278-12754096 REVERSE LENGTH=2031
Length=2031
Score = 1404 bits (760), Expect = 0.0
Identities = 826/858 (96%), Gaps = 4/858 (0%)
Strand=Plus/Plus
Query 380 AGCAATAGGTTGATGGGTTCTGCAGCCAGACAGCCTCTCTTCTCATTTGGTGTTATTGCT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 AGCAATAGGTTGATGGGTTCTGCAGCCAGACAGCCTCTCTTCTCATTTGGTGTTATTGCT 146
Query 440 GATGTTCAGTATGCTGATATTCCAGATGGCCGCTCTTTTTTAGGTGTTCCTAGGTATTAC 499
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 147 GATGTTCAGTATGCTGATATTTCTGATGGCCGCTCTTTTTTAGGTGTTCCTAGGTATTAC 206
Query 500 AGAAACAGCATCCTTGTCCTCCAAAGAGCTGTTGAAACTTGGAACCAACATGGTAACCTC 559
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 207 AGAAACAGCATCCTTGTCCTTCAAAGAGCTGTTGAAACTTGGAACCAACATGGTAACCTC 266
Query 560 AAATTTGTTATTAACATGGGAGACATTGTTGATGGTTTTTGTCCCAAAGATCAATCCTTG 619
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 267 AAATTTGTTATTAACATGGGTGACATTGTTGATGGCTTTTGTCCCAAAGATCAATCCTTG 326
Query 620 GCTGCCACTAAGAAACTGGTTCGTGAATTCGACAAATTCAACGGTCCTGTGTATCATATG 679
||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 327 GCTGCCACTAAGAAACTAGTCCATGAATTCGAGAAATTCAACGGTCCTGTGTATCATATG 386
Query 680 ATTGGCAATCACTGCCTCTACAATCTCCCCCGTGAAGAGTTGCTTCCGTTACTCAAGATC 739
||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 387 ATTGGTAATCACTGCCTCTACAATCTCCCCCGCGAAGAGTTGCTTCCGTTGCTGAAGATC 446
Query 740 CCAGGTCGTGATGGCAATGCTTATTATGATTTCTCACCAACCCCAGAGTATAGAATTGTG 799
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 447 CCAGGTCGTGATGGCAATGCTTATTATGATTTCTCACCAACCCCGGAGTATAGAGTTGTG 506
Query 800 GTGTTAGATTGTTATGACATCAGTGCTCTTGGATGGCCACAAGACCATCCTAATACTATC 859
||||||||| ||||||||||||||||| |||||||||| || || |||||||||||||||
Sbjct 507 GTGTTAGATGGTTATGACATCAGTGCTGTTGGATGGCCTCAGGAACATCCTAATACTATC 566
Query 860 GCTGCATTGAAAATACTTGAAGAAAAGAACCCAAACTCAGaaaaaaaCAGCCCCGC-GGG 918
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 567 GCTGCATTGAAAATACTTGAAGAAAAGAACCCAAACACAGACAAAAACAGCCCCGCAGGG 626
Query 919 TCTTGAGGATGTTG-AGAGGAGATTTGTCAAGTATAATGGTGGTGTTGGGGAGAAACAGC 977
||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 -CTTGAGGATGTTGCA-AGGAGATTTGTGAAGTATAATGGTGGTGTTGGGGAGAAACAGC 684
Query 978 TGCAATGGCTAGACAGTGTTCTTCAGGATGCAACGAATTCAAACCAGAGAGTTATCGTAT 1037
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 685 TGCAATGGCTAGACAGTGTTCTTCAGGATGCATCGAATTCAAACCAGAGAGTTATCGTAT 744
Query 1038 GTGGGCATGTGCCTATGAGCCCTGGTGTGGCATCCAAAGCAGCCTTGTTATGGAATTTTG 1097
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 745 GTGGGCATGTGCCTATGAGCCCTGGTGTGGCATCCAAAGCAGCTTTGTTATGGAATTTTG 804
Query 1098 ATGAAGTGATGAACATTATACACAAGTATGACTCTGTTAAAGTTTGTTTGTCCGGACACG 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 805 ATGAAGTGATGAACATTATACACAAGTATGACTCTGTTAAAGTTTGTTTGTCCGGACATG 864
Query 1158 ATCATAAAGGAGGATACTTTGTTGATTCTCATGGGGTTCACCATAGATCTTTGGAAGCTG 1217
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 865 ATCATAAAGGAGGATACTTTGTTGATTCTCATGGGGTTCACCATAGATCCTTGGAAGCTG 924
Query 1218 CCTTGGAGTGCCCCCCAG 1235
|||||||||| |||||||
Sbjct 925 CCTTGGAGTGTCCCCCAG 942
Score = 80.5 bits (43), Expect = 4e-14
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 2 TTCCGCCTTGTCCGATTCTGCTTCACCTCTGCTCGTTCCTTGCCCGATCCTCGCA 56
|||||||||||||||||||||||||||||||| | ||||||| | ||||||||||
Sbjct 17 TTCCGCCTTGTCCGATTCTGCTTCACCTCTGCGCATTCCTTGTCTGATCCTCGCA 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5