BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492373
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24690.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domai... 3526 0.0
> AT4G24690.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing
protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein | chr4:12741033-12744533 FORWARD LENGTH=2604
Length=2604
Score = 3526 bits (1909), Expect = 0.0
Identities = 2313/2499 (93%), Gaps = 64/2499 (3%)
Strand=Plus/Plus
Query 1 GTTGTTTACGATAAAAGCGGATTACGGGTACGcttcttctaggataaatctttccccgat 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 4 GTTGTTTACGAGAAAAGCGGATTACGGGTACGCTTCTTCTAAGATAAATCTCTCCCCGAT 63
Query 61 tctctcttttttct-tct-tcttcttcttcttcgccaattagggtttcttcttctcgctt 118
|||||| ||||||| || | | |||| ||| ||||||||| | ||||||||||||
Sbjct 64 TCTCTC-TTTTTCTCGCTAGATAC-TCTTTTTCTTCAATTAGGG--T-TTCTTCTCGCTT 118
Query 119 -ctcttttgattctctcCAGCTGATCTCATCCCCCTTTTGAGCGATGGAGTCTACTGCT- 176
| ||||| |||||||||||||||||| || | || || | |||||||||||||||||
Sbjct 119 GC-CTTTTAATTCTCTCCAGCTGATCTGAT-CTCC-GTT-ACCGATGGAGTCTACTGCTA 174
Query 177 ACTGCTCTCGTCGTCAAGGTGAGCTATGGAGGTGTGCTTAGGCGCTTCAGGGTGCCTGTT 236
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 175 AC-GCACTCGTCGTCAAGGTGAGCTATGGAGGTGTGCTTAGGCGTTTCAGGGTGCCTGTT 233
Query 237 AAAGCCAATGGACAGCTTGATCTTGAAATGGCTGGTCTTAAGGAAAAGATCGCTGCTCTC 296
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAAGCTAATGGACAGCTTGATCTTGAAATGGCTGGTCTTAAGGAAAAGATCGCTGCTCTC 293
Query 297 TTTAA-C-CTCT-CGGATGCTGATTTGTCTCTGACTTACTCTGATGAGGATGGGGATGTG 353
||||| | |||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 294 TTTAACCTCTCTGCGGATGCTGAATTGAGTCTGACTTACTCTGATGAGGATGGGGATGTG 353
Query 354 GTTGCCCTTATTGATGACAACGATCTCTTTGATGTTACTAATCAGCGTCTTAAGTTCTTG 413
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTTGCCCTTGTTGATGACAACGATCTCTTTGATGTTACTAATCAGCGTCTTAAGTTCTTA 413
Query 414 AAGATCAATGTGCAGTTGAACTCTGGCAT-TCCCACAAACCCTATTACTCCAGAGAGTAG 472
|||||||| | | ||||| ||||| | | |||| ||| || | |||||||||||||
Sbjct 414 AAGATCAA--T---G-TGAACGCTGGCGTGT-CCACTAACTCTGCTGCTCCAGAGAGTAG 466
Query 473 TGGGAGTTCCACACCTGCTGGTATGCCTAACAGCCAAAACCCTGTTTCCAAAATCCAGAA 532
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 467 TGGGAGTTCCACACCTGCGGGTATGCCT---------AACCCGGTTTCCAAAATCCAGAA 517
Query 533 GGGTATAAATGATGTTCTGATGGCTGTACCTAACCCCATGCGTGATACCATATCGAAGGT 592
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 518 GGGTATAAATGATGTTCTGATGGCTGTACCTAACCCGATGCGTGATACCATATCAAAGGT 577
Query 593 GTACATGGACCTTGCATCAAAGG-CTACAACTTCTAGTCCTGTAGTTGGTGAGATGTTTG 651
|||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |||
Sbjct 578 GTACATGGACCTTGCATCCAAGGCCT-CAACTTCTAGTCCTGTAGTTGGTGAGATGCTTG 636
Query 652 ATTGTATCTCCAAGCTAGGGCAACTCTCAGTTCCTCAGGACAGTAGTCCTTGCTCACCTG 711
|||| || |||||||||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct 637 ATTGCATTTCCAAGCTAGGGCAGCTCTCAATTCCTCAGGAAAGTAGTCCTTGCTCACCTG 696
Query 712 TTACTAAGCCTGGTTCTTCAGGCCCTTCCCTGAGCAGGGATGTTCCTTCCGCTGCTGAAA 771
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 697 TTACCAAGCCTGGTTCTTCAGGTGCTTCCCTGAGCAGGGATGTTCCTTCCGCTGGTGGAA 756
Query 772 AGAAGGATATCTCTGAGAGGACCCAGACCGGAAGGAAACCTGCTAATCTGAATGAACCCA 831
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 757 AGAAGGATATCTCTGAGAGGACCCAGACCGGAAGGAAACCTGTTAATCTGAATGAACCCA 816
Query 832 CTGGCTTTGCTGATTCTAAGACTTCTGGTCATGTACCAACCTCGTCTGGACTGGGTGCTA 891
||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 817 CTGGC---GCTCATTCAAAGACTTCTGGTCATGTACCAAACTCGTCTGGACTGGGTGCTA 873
Query 892 ATTTCAACGAGTGTCCCTTTAGTGGCAGTACCCTGAATTACTCCTGTCCAAATCCAGTTA 951
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 874 ATTTCAACGAGTGTCCCTTTAGTGGCAGTACCATGAATTACTCCTGTCCAAATCCAGTTA 933
Query 952 ACCTCAACAAGCATGGTCGTCGTGTATGTCATTCCAAAAAGAGCACCAATGGTGATTACT 1011
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 934 ACCTCAACAAGCATCCTCGTCGTGTTTGTCATTCCAAAAAGAGCACCAATGGTGATTACT 993
Query 1012 GGACTTCATTGGGTGTATTCCATAAGGGCATCCGTTGTGACGGATGTGGAGTTCTTCCAA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GGACTTCATTGGGTGTATTCCATAAGGGCATCCGTTGTGACGGATGTGGAGTTCTTCCAA 1053
Query 1072 TTACTGGGCCTAGATTTAAGTCGAAAGTTAAAGAAGACTATGATCTTTGCACCATCTGCT 1131
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1054 TTACTGGGCCTAGATTTAAGTCGAAAGTTAAAGAAGACTATGATCTGTGCACCATCTGCT 1113
Query 1132 ATTCGGTGATGGGTAACGAGGGGGATTACACAAGGATGGATAAGCCTGTATCAGTTCAAC 1191
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1114 ATTCGGTGATGGGTAACGAGGGGGATTACACAAGAATGGATAAGCCTGTATCCGTTCAAC 1173
Query 1192 ATCTACATCCTTTTAGAGGACAGTTTATCCAATTTCCTAATCCTTGGTCGAGCCACCCTG 1251
|||| |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1174 ATCTGCATCCTTTTAGAGGACCGTTTACCCAATTTCCTAATCCTTGGTTGAGCCACCCTG 1233
Query 1252 TGCCGCGAGCAACCAATGGAGGTTCACCT-TCAAGGTGTACTCGGCCTAAACTAGACAGT 1310
|||| |||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||
Sbjct 1234 TGCCACGAGCAACCAATGGAGGTGCACCTCTCA-GGTGTACTCGCCCTAAACTAGACAGT 1292
Query 1311 CGCTTTGTCCTTGATGTGAACGTTGCTGATGGAACCGTTGTTGCTCCATCCGCCCCATTT 1370
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1293 CGGTTTGTCCTTGATGTGAATGTAATTGATGGAACCGTTGTTGCTCCATCCGCCCCATTT 1352
Query 1371 ACTAAGATTTGGAAAATGAGGAACAGTGGTTCGCTGGTGTGGCCTCAGGGCACACAGATT 1430
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1353 ACTAAGATTTGGAAAATGAGGAACAGTGGTTCGCTGGTGTGGCCACAGGGCACACAGATT 1412
Query 1431 GTCTGGATCGGTGGGGACAGGTTCTGCAACTCATTGTCAGTTGATTTACAGATTCCAAAG 1490
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1413 GTCTGGATCGGTGGGGACAGGTTCTGCAACTCCTTGTCAGTTGATTTACAGATTCCAAAG 1472
Query 1491 GAGGGTGTGCCTATCTATAGTGAGCTTGATGTCAAAGTTGATTTTGTTGCACCAGAGTTA 1550
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1473 GAGGGTGTGCCTATCTATAGTGAACTTGACGTCAAAGTTGATTTTGTTGCACCAGAGTTA 1532
Query 1551 CCTGGTCGATACATTTCTTATTGGAGGATGGCTTCCTCTGACGGTGCTAAGTTTGGGCAA 1610
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1533 CCTGGTCGATACATTTCTTATTGGAGGATGGCTACCTCTGACGGTGCTAAGTTTGGGCAA 1592
Query 1611 CGTGTTTGGGTGTTGATACATGTTGATGCATCCCTCAAGAATTCTATTGTGAATGAGCTC 1670
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |
Sbjct 1593 CGTGTTTGGGTGTTGATACATGTTGATGCATCTCTGAAGAATTCTGTTGTGAATGAGTTT 1652
Query 1671 CACGGACTCAACCTGAATGCCTCCCCCTCCCTTGATGAGAATTTTTCAAGTGAATTTCCA 1730
|| ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 1653 CATGGACTGAACCTTAATGCCTCCCCCTCCCTTGATGAGAATTTTCCAAGCGAATTTCTA 1712
Query 1731 GGGATTATTAATTATGAGTCAGCTCAACCTGGCAGCTCCAATGTCAATCCTGGTACAGTG 1790
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1713 GGGATTATGAATTATGAGTCAGCTCAACCTGGCAGCTCCAGTGTCAATCCTGGGACCGTG 1772
Query 1791 AAAGGTGCTGATCTAGAGGGAGAAGAAGTTGGTGAATCGCAGGTCC-TGGAGAAAGAAAA 1849
|||||| ||||||||||||| |||| |||||||| | |||| || |||| ||||||||
Sbjct 1773 AAAGGTACTGATCTAGAGGGCGAAG---TTGGTGAAACACAGG-CCGTGGAAAAAGAAAA 1828
Query 1850 CACGTT-GATTGGTGAAGTTCGTCTTGCTATCCCTCA-GAGTCATTCTCCTTCATCTTCA 1907
| | || | ||||||||| || || |||||||||||| | ||||||||||||||||||||
Sbjct 1829 C-CTTTTGGTTGGTGAAGCTCATCCTGCTATCCCTCACG-GTCATTCTCCTTCATCTTCA 1886
Query 1908 TCTTCGTCATTTAACATGGTCGAGTTCCCAAGTATGCCTGCTGTTGAGGTCGTGTCTGGT 1967
||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 1887 TCTTCTTCATTTAACATGGTCGACTTCCCAAGCATGCCTGCTGTTGAGGTCTTGTCTGGT 1946
Query 1968 GGTTCTTCATCTAC-A-AAA-GACGTCCCAGTTCCTCTTCAAGAGGATTTAGAGAAGAAT 2024
|||||||||||||| | ||| ||||| |||||||||||||| |||||| |||| ||||||
Sbjct 1947 GGTTCTTCATCTACTACAAAAGACGTGCCAGTTCCTCTTCAGGAGGATATAGAAAAGAAT 2006
Query 2025 GACGTTGAGATAACCATGCTCAAGGAGCTCGAGGAAATGGGTTTCAAGGAGATAGATTTG 2084
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 GACGTGGAGATAACCATGCTCAAGGAGCTCGAGGAAATGGGTTTCAAGGAGATAGATTTG 2066
Query 2085 AACAAGGAGATCTTGAGGGATAACGAGTACAACTTGGAGCAGTCCGTTGATGCTCTTTGT 2144
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2067 AACAAGGAGATCTTGAGGGATAACGAGTACAACCTGGAGCAGTCTGTTGATGCTCTTTGT 2126
Query 2145 GGAGTTAGCGAGTGGGATCCTATCCTAGAGGAGCTTCAGGAAATGGGCTTCTGTGATGAT 2204
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2127 GGAGTTAGCGAGTGGGATCCAATCCTAGAGGAGCTTCAGGAGATGGGCTTCTGTGATGAT 2186
Query 2205 GTGACGAACAAGAGGCTGCTGAAGAAGAACAATGGAAGCATCAAAGGCGTGGTAATGGAT 2264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 GTGACGAACAAGAGACTGCTGAAGAAGAACAATGGAAGCATCAAAGGCGTGGTAATGGAT 2246
Query 2265 CTCCTCACAGGGGAGAAGGAGGCTTAATGAGCT-TTTGGATTCTGGCTACTCTTCTCTAT 2323
||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||
Sbjct 2247 CTCCTCACAGGGGAGAAGGAGGCTTGATGAGCTCTTTGGTTTCTGGCAACTCTTCTCTAT 2306
Query 2324 CTATCTTATC-A---GGAATAATTATGTTTTTATAAATAAAACCTGATCTCT-AGTTTGA 2378
|| ||||||| | |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2307 CTCTCTTATCTATCAGGAATAATTATGTTTT-ATAAATAAAACCTGATCTCTTAGTTTGG 2365
Query 2379 TTTCGTGCTGCGTCACATGGGTGTGTTCCTTTGCTTTGTGTTGG-ATGATGTTACTAT-T 2436
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
Sbjct 2366 TTTCGTGCTGCGTCACATGG-TCTGTTCCTTTGCTTTGTGTTGGGATGATGTTACTATGT 2424
Query 2437 TAAAATTTATCTAAGACGTGGATGGTTTCTTTCTTATTT 2475
||| | |||||||||| |||||||||||||||||||||
Sbjct 2425 TAAC-TCTATCTAAGACATGGATGGTTTCTTTCTTATTT 2462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123862182267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5