BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492374
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24670.1 | Symbols: TAR2 | tryptophan aminotransferase relat... 2159 0.0
> AT4G24670.1 | Symbols: TAR2 | tryptophan aminotransferase related
2 | chr4:12727834-12730745 REVERSE LENGTH=1480
Length=1480
Score = 2159 bits (1169), Expect = 0.0
Identities = 1342/1426 (94%), Gaps = 10/1426 (1%)
Strand=Plus/Plus
Query 225 TTTGAGAGAAAATGGGACAGATTCCGAGGGTTCTGTCTTGGAGGAATATGTTGGTCCTCT 284
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 41 TTTGAGAGAAAATGGGACAGATTCCGAGGTTTCTTTCTTGGAGGAATATGTTGGTCCTCT 100
Query 285 CATTGGCCATCAACTTCAGCTTGATTCTAAAGATTTTGAAGGGTGACAGAGAACGAGGAG 344
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 101 CGTTGGCCATCAACTTCAGCTTGATTCTAAAGATTTTGAAGGGTGATAGAGAACGAGGAG 160
Query 345 ATTCATGGGACAGAACGGCGTATGTTAGCATATGGCCCGTGGTATCGACCACGGCTTCAG 404
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 161 ATTCATGGGACAGAACAGCGTATGTTAGCATATGGCCCGTGGTATCCACCACGGCTTCAG 220
Query 405 GTTCCTCGTCGTTGTCTTCAGCATCTTGCAACTATAGCAAGATCGAAGAAGACGATGATA 464
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 221 AATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAGCAAGATTGAAGAAGACGATGATA 280
Query 465 GAATTATCAACCTCAAATTTGGCGATCCAATGGTGTATGAGAGATATTGGCAGGAAAATG 524
|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 281 GAATTATCAATCTCAAATTTGGTGATCCAACGGTGTATGAGAGATATTGGCAGGAAAATG 340
Query 525 GAGAGGTTACAACAATGGTGATACCTGGATGGCAATCTCTTAGCTATTTTTCAGATGAAA 584
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAGAGGTGACAACAATGGTGATACCTGGATGGCAATCTCTTAGCTATTTTTCAGATGAAA 400
Query 585 ACAACCTTTGTTGGTTTCTTGAGCCAGAGCTTGGCAAAGAGATTGTGAGGGTGCATAAGG 644
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 401 ACAACCTCTGTTGGTTTCTTGAGCCAGAGCTTGCCAAAGAGATTGTGAGGGTGCATAAGG 460
Query 645 TTGTTGGAAATGCTGTAACCCAAGACCGCTTCATCGTTGTTGGCACTGGCTCAACACAGT 704
||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 461 TTGTTGGGAATGCTGTAACGCAAGACCGCTTCATTGTTGTTGGCACTGGCTCAACACAAT 520
Query 705 TGTATCAGGCTGCCCTATATGCTCTCTCCCCACATGAAGACTCTGGTCCTATTAATGTCG 764
||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 521 TGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATGACTCCGGTCCCATTAATGTCG 580
Query 765 TCTCAACTGCACCTTATTATAGTTCATACCCCTTGATTACAGACTGCCTCAAATCGGGTT 824
| ||| | |||| ||||||||| ||||||| ||||||||||||||||||||||| ||||
Sbjct 581 TGTCAGCCACACCCTATTATAGTACATACCCGTTGATTACAGACTGCCTCAAATCAGGTT 640
Query 825 TATATCGATGGGGCGGAGATGCAAAGACATACAAAGAAGATGGTCCATACATTGAACTTG 884
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 641 TATATCGATGGGGTGGAGATGCAAAGACGTACAAAGAAGATGGTCCATACATTGAACTTG 700
Query 885 TTACATCTCCAAACAACCCTGATGGGTTCTTGAGAGAATCAGTAGTGAACAGTAGTAAAG 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 701 TTACATCTCCAAACAACCCTGATGGGTTCTTGAGAGAATCAGTAGTGAACAGTACTGAAG 760
Query 945 GTATATTGATCCATGATTTAGCTTACTACTGGCCACAGTATACACCGATAACATCAGCAG 1004
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 761 GTATATTGATCCATGATTTGGCTTACTATTGGCCACAGTATACACCGATAACATCACCAG 820
Query 1005 CTGATCACGATGTCATGCTCTTCACTGCTTCAAAGAGCACCGGCCATGCAGGGATGCGCA 1064
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 821 CTGATCACGATGTTATGCTCTTCACTGCTTCAAAGAGCACTGGCCATGCAGGGATACGGA 880
Query 1065 TTGGATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAAAATACATTGAAC 1124
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 881 TTGGATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACATTGAAC 940
Query 1125 TCAACACGATTGGGGTTTCAAAGGACTCGCAGCTTAGAGTAGCCAAGGTTCTAAAGGTTG 1184
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 941 TCAACACGATTGGGGTTTCAAAGGACTCACAGCTTAGAGTAGCCAAGGTTCTTAAGGTTG 1000
Query 1185 TGTCAGACAGTTGTGGGAATGAAACGGCCAAATCCTTCTTTGACCACAGTTATGATGCTA 1244
||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||
Sbjct 1001 TGTCAGACAGTTGTGGGAATGTAACGGGCAAATCTTTCTTTGACCATAGTTATGATGCTA 1060
Query 1245 TGTATGAGAGGTGGAAGCTATTGAAACAAGCGGCGAAGGATACTAAACGTTTCAGCGTTC 1304
|||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1061 TGTATGAGAGGTGGAAACTATTGAAACAAGCAGCAAAGGATACTAAACGTTTCAGTGTTC 1120
Query 1305 CTGATTTTGCCTCTCAACGCTGCAATTTCTTCGGCAGGGTCTTTGAGCCACAACCAGCTT 1364
||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1121 CTGATTTCGTCTCTCAACGTTGCAATTTCTTTGGCAGGGTCTTTGAGCCACAACCAGCAT 1180
Query 1365 TTGCATGGTTTAAGTGTGGAGAAGAGATTGTGGATTGTGAGAAGTTTCTTAGAGAGGAGA 1424
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1181 TTGCATGGTTTAAGTGTGAAGAAGGGATAGTGGATTGTGAGAAGTTTCTTAGAGAGGAGA 1240
Query 1425 AGAAGATTCTAACTAAAAGTGGAAAGCACTTTGGAGATGAGCTAAGTTATGTGAGGATAA 1484
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1241 AGAAGATTCTAACTAAAAGTGGAAAGTACTTCGGAGATGAGCTAAGTAATGTGAGGATAA 1300
Query 1485 GCATGTTGGATAGAGATACTAACTTTCATATTTTCCTTCACAGGATTTCATCTTCCTCTA 1544
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 1301 GCATGTTGGATAGAGATACTAACTTTAATATTTTCCTTCACAGGATTACATCTTCCTTTA 1360
Query 1545 ATTCAACTTTGTAAGTGCATGTGCATGTGATTAATTATGATCGATTGTCATAACTAATAT 1604
|||||||||||||||||||| |||||||||||| | ||||||||||||||||| |
Sbjct 1361 ATTCAACTTTGTAAGTGCATATGCATGTGATTA-T---GATCGATTGTCATAACT--T-- 1412
Query 1605 TGCAACAAGTGTTTT-CTCCATATATATTATCGGAAATTTGAATAA 1649
|||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct 1413 -GCAACAAGTGTTTTGCTCCATAAATATTATTGGAAATTTGAATAA 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5