BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492376
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24660.1 | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox pro... 1253 0.0
> AT4G24660.1 | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein
22 | chr4:12724743-12725637 REVERSE LENGTH=895
Length=895
Score = 1253 bits (678), Expect = 0.0
Identities = 844/918 (92%), Gaps = 35/918 (4%)
Strand=Plus/Plus
Query 1 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATAATAGTTTTTTAAGTAACAATCTAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATTATAGTTTTTTAAGTAACAATCTAA 61
Query 61 -T-T-GTACGGATGTCTCTTGAGATGTTGAAGAATTAAG-AATAAAGAAAGA--G---GG 111
| | ||||||||||||||||||||||| |||||||||| |||||||||||| | ||
Sbjct 62 TTGTAGTACGGATGTCTCTTGAGATGTTCAAGAATTAAGAAATAAAGAAAGAGGGATCGG 121
Query 112 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCGGC 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCTGC 181
Query 172 GGTTACGACTCTCTGAGCGGCGAGGGAGCCACGTCTAGCGGCGGCGGTGGAGGAGGAGGA 231
|||||||||||||| ||||| ||||||||||| |||| | || |||||||||| ||||
Sbjct 182 GGTTACGACTCTCTAAGCGGTGAGGGAGCCACATCTA---GTGGTGGTGGAGGAGTAGGA 238
Query 232 AGGAATAAAGGAGTTGGAGGGAAGTTGAGGTATAGAGAGTGCTTGAAGAATCATGCTGTT 291
|||| |||||||||||||| |||| | ||||||||||||||||||||||| |||||||||
Sbjct 239 AGGAGTAAAGGAGTTGGAGCGAAGATAAGGTATAGAGAGTGCTTGAAGAACCATGCTGTT 298
Query 292 AACATCGGCGGCCACGCCGTGGACGGTTGCTGTGAGTTCATGCCTTCCGGTGAAGATGGT 351
||||| || |||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 299 AACATAGGTGGCCACGCCGTGGACGGTTGTTGCGAGTTTATGCCTTCCGGTGAAGATGGA 358
Query 352 ACGCTCGACGCTCTCAAGTGTGCAGCTTGTGGCTGCCACCGCAACTTCCACCGCAAGGAA 411
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 ACGCTCGACGCTCTTAAGTGTGCAGCTTGCGGCTGCCACCGCAACTTCCACCGCAAGGAA 418
Query 412 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 478
Query 472 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCCACGGCTACAGGGCAGCCTATA 531
||||||||||||||||||||||||||||||||||||||| | | || | |||| ||
Sbjct 479 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCC--G-C----GG-C-GCCT-TA 528
Query 532 -AGGCCGCCCGTGGCGTCCGCGGACGAGGAGGATACATCGAATCCGAGCAGCAGCGGCGG 590
||||| |||| ||| || | |||||||||||||||||| ||||| ||||||||||||||
Sbjct 529 CAGGCCACCCGCGGCATCGGGGGACGAGGAGGATACATCAAATCCTAGCAGCAGCGGCGG 588
Query 591 GACCACCGCAAAGAGGTTTAGAACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGTTAGC 650
|||||| | || |||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 589 GACCAC-G-AA-GAGGTTTAGAACGAAGTTCACGGCGGAACAGAAAGAGAAGATGTTAGC 645
Query 651 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 705
Query 711 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 765
Query 771 TTCTCTTGGTAAGAAACCCTAATTTTACTCAAGATATGATTTAAAACACTAGAGGATCAT 830
||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 766 CTCTCTTGGTAAGAAACCCTAATTTTGCTCGAGACATGATTTAAAACACTAGAGGATCAT 825
Query 831 AATTGGCAAGAAATTTCTTTTTT-GGTATGACTCTTCTGTAACTACTTCTGCTTATCAGT 889
||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 826 AATTG--------TTTCTTTTTTTGGTATGACTCTTCTGTAACTACTTCTGCTTATTAGT 877
Query 890 TGTGTTCTTTTTTCCTGG 907
| |||| |||||||||||
Sbjct 878 TATGTTATTTTTTCCTGG 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5