BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492378
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24640.1 | Symbols: APPB1 | Plant invertase/pectin methylest... 1284 0.0
> AT4G24640.1 | Symbols: APPB1 | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:12717788-12719017
FORWARD LENGTH=840
Length=840
Score = 1284 bits (695), Expect = 0.0
Identities = 785/828 (95%), Gaps = 8/828 (1%)
Strand=Plus/Plus
Query 1 AAACAACATAGAACTGAATAACAACCGAAAACTTGAGCAAGAAAACTTCCGACGCTAAGA 60
|||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 AAACAACACAAAACTGAATAACAACCGGAAACTTGAGCAACAAAACTTCCGACGCTAAGA 60
Query 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCCGCGACGGCAATTACGTTGCAACTA 120
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCTGCGGCGGCAATTACGTTGCAACTA 120
Query 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGTGATCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGCGATCGT 180
Query 181 GCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240
Query 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCACATCACACGCGGAGAAG 300
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCATATCCCACGCGGAGAAG 300
Query 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGACTGCGTTTACA 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGGTTGCATTTACA 360
Query 361 GAGTGCCACAAGGCCTACCTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGTGCCACAAGGCCTACTTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420
Query 421 AAGGCATCCCCGGACACGGCTAACTACGACGTCAGGGCTTCAAGCGACAACATGAGGCGC 480
||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 421 AAGGCATCCCCCGACACGGCTAACTACGACGTCAGGGCTTCCAGTGACAGCATGAGGCGC 480
Query 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACA 540
Query 541 GTGCAGATGGAGAAACTCCTTGACCTTGCAGCTGGAGCCGCCGATGCCGTTGACGACGAC 600
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 541 GTGCAGATGGAGAAACTACTTGATCTTGCAGCTGGAGCCGCCGATGCCGTTGATGACGAC 600
Query 601 GATGAGAACATTCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTAGtttttttt 660
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 GATGAGAACATGCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTCGTTTTTTTT 660
Query 661 tttttGTTCACAATACAAATGGAAATAAATAAATGAATATGTATACATTACATACAAACT 720
||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 661 G----GTTCATAATACAAATGGAAATAAGTAAATGAATATGTATACATCACATAGAAACT 716
Query 721 GTGTTATGATAAATTAGTAATTCAGTTTTTGAAATATATAATGTGCTCAAGTTTTGCATC 780
|||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||
Sbjct 717 GTGTTATGGTAAATTAGTAATTCAGTTTTTGAAATA-ATG-TG-GTT-AAGTTTTGCATC 772
Query 781 TCTTACTAATTTTATATCGATCTAATTTCTGGAGCAGAAAAATGACTC 828
||||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct 773 TCTTACTAATTTTGTATCTATCTAATTTCTGGAGCAGGAAAATGACTC 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5