BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492378 Length=828 Score E Sequences producing significant alignments: (Bits) Value AT4G24640.1 | Symbols: APPB1 | Plant invertase/pectin methylest... 1284 0.0 > AT4G24640.1 | Symbols: APPB1 | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12717788-12719017 FORWARD LENGTH=840 Length=840 Score = 1284 bits (695), Expect = 0.0 Identities = 785/828 (95%), Gaps = 8/828 (1%) Strand=Plus/Plus Query 1 AAACAACATAGAACTGAATAACAACCGAAAACTTGAGCAAGAAAACTTCCGACGCTAAGA 60 |||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1 AAACAACACAAAACTGAATAACAACCGGAAACTTGAGCAACAAAACTTCCGACGCTAAGA 60 Query 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCCGCGACGGCAATTACGTTGCAACTA 120 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCTGCGGCGGCAATTACGTTGCAACTA 120 Query 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGTGATCGT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGCGATCGT 180 Query 181 GCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240 Query 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCACATCACACGCGGAGAAG 300 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCATATCCCACGCGGAGAAG 300 Query 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGACTGCGTTTACA 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGGTTGCATTTACA 360 Query 361 GAGTGCCACAAGGCCTACCTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGTGCCACAAGGCCTACTTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420 Query 421 AAGGCATCCCCGGACACGGCTAACTACGACGTCAGGGCTTCAAGCGACAACATGAGGCGC 480 ||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct 421 AAGGCATCCCCCGACACGGCTAACTACGACGTCAGGGCTTCCAGTGACAGCATGAGGCGC 480 Query 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACT 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACA 540 Query 541 GTGCAGATGGAGAAACTCCTTGACCTTGCAGCTGGAGCCGCCGATGCCGTTGACGACGAC 600 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 541 GTGCAGATGGAGAAACTACTTGATCTTGCAGCTGGAGCCGCCGATGCCGTTGATGACGAC 600 Query 601 GATGAGAACATTCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTAGtttttttt 660 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 GATGAGAACATGCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTCGTTTTTTTT 660 Query 661 tttttGTTCACAATACAAATGGAAATAAATAAATGAATATGTATACATTACATACAAACT 720 ||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct 661 G----GTTCATAATACAAATGGAAATAAGTAAATGAATATGTATACATCACATAGAAACT 716 Query 721 GTGTTATGATAAATTAGTAATTCAGTTTTTGAAATATATAATGTGCTCAAGTTTTGCATC 780 |||||||| ||||||||||||||||||||||||||| || || | | |||||||||||| Sbjct 717 GTGTTATGGTAAATTAGTAATTCAGTTTTTGAAATA-ATG-TG-GTT-AAGTTTTGCATC 772 Query 781 TCTTACTAATTTTATATCGATCTAATTTCTGGAGCAGAAAAATGACTC 828 ||||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct 773 TCTTACTAATTTTGTATCTATCTAATTTCTGGAGCAGGAAAATGACTC 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40338020041 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5