BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492381
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24620.1 | Symbols: PGI1, PGI | phosphoglucose isomerase 1 |... 3770 0.0
> AT4G24620.1 | Symbols: PGI1, PGI | phosphoglucose isomerase 1
| chr4:12708752-12712825 REVERSE LENGTH=2277
Length=2277
Score = 3770 bits (2041), Expect = 0.0
Identities = 2196/2272 (97%), Gaps = 6/2272 (0%)
Strand=Plus/Plus
Query 1 CCTACCTAATCTAAGCAGGGCCGTTCGCTCCCACCAAAGGACAAATCTCTCTCCCGCACT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 CCTACCTAATCTAAGCAGGGCCGCTCGCTCCCACCAAAGGACAAATCTCTCTCCCGCACT 61
Query 61 CATCTCTGTTCATTGGTTCCTCCCAAAAAATATCAATCAAATCGGAATAAACTAAACGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 CATCTCTGTTCATTGGTTCCTCCCAAAAAATATCAATCAAATCGGAATAAACTATACGAA 121
Query 121 CCCTCGAATATAAAGCTCCACCCTTTCTCTTTCTA--TCTCTCTCTCCATTGTTGACTGA 178
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 122 TCCTCCAATATAAAGCTCCACCCTTTCTCTTTCTATCTCTCTCTCTCCATTGTTGACTGT 181
Query 179 CTCTCTTCCCTCGTAAACATCGCTGtctct-acgatggcctctctctcaggcctctactc 237
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 182 CTCTCTTCCCTCGTAAACATCGCTGTCTCTAAAGATGGCCTCTCTCTCAGGCCTATACTC 241
Query 238 ttcttctccatctctcAAACCTTCCAAAAACCTTTCCTTTAAAGCATTGCCGGCGCTATC 297
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 242 TTCTTCTCCATCTCTCAAACCTGCCAAAAACCATTCCTTTAAAGCATTGCCGGCGCAATC 301
Query 298 CCGCGATTCCTTCTCTTTCCCACATACCTCCAAACCCACCAATCTACCGTTGACTCTCTC 357
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCGAGATTCCTTCTCTTTCCCACATACCTCCAAACCCACCAATCTACCGTTGACTCTCTC 361
Query 358 CTCGGCTCGCTCCGTGGCGCGCGACATTTCTCATGCGGATTCGAAGAAAGAGCTTCTCAA 417
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 CTCGGCTCGTTCTGTGGCACGCGACATTTCTCATGCGGATTCGAAGAAAGAGCTTCTTAA 421
Query 418 GGATCCGGATGCGTTGTGGAAGCGATACCTCGATTGGTTCTATCAGCAAAAAGAGCTCGG 477
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 422 GGATCCGGATGCGTTGTGGAAGCGATACCTCGATTGGTTTTATCAGCAGAAAGAGCTTGG 481
Query 478 GTTGTATCTGGATATTAGTCGGGTCGGATTCACCGATGAGTTTGTGGCCGAAATGGAGCC 537
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 482 GTTGTATCTGGATATTAGTCGGGTCGGATTTACCGATGAGTTTGTGGCTGAAATGGAGCC 541
Query 538 CCGGTTTCAGGCAGCCTTTAAGGCTATGGAGGATCTTGAAAAAGGGTCTATAGCGAATCC 597
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAGGTTTCAAGCTGCGTTTAAGGCTATGGAGGATCTTGAAAAAGGGTCTATAGCGAATCC 601
Query 598 GGATGAAGGAAGAATGGTCGGACATTACTGGCTTAGGAACTCCAAGCTCGCACCTAAGCC 657
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 602 TGATGAAGGAAGAATGGTTGGACATTACTGGCTTAGGAACTCTAAGCTCGCACCTAAGCC 661
Query 658 TACTTTAAAGACCTTGATCGAGAACACACTTGATTCTATCTGCGCTTTCTCCGACGACAT 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 662 TACTTTAAAGACCTTGATCGAGAACACACTTGATTCTATTTGCGCTTTCTCCGACGACAT 721
Query 718 AATCTCTGGAAAGATAAAGCCACCATCTTCTCCTGAGGGTCGTTTTACTCAGATACTTTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AATCTCTGGAAAGATAAAGCCACCATCTTCTCCTGAGGGTCGTTTTACTCAGATACTTTC 781
Query 778 TGTTGGCATTGGTGGGTCGGCTCTTGGACCTCAATTTGTCGCTGAGGCCTTGGCTCCTGA 837
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGTTGGCATTGGAGGCTCGGCTCTTGGACCTCAATTTGTCGCTGAGGCCTTGGCTCCTGA 841
Query 838 TAATCCTCCCTTGAAGATAAGATTCATTGACAACACCGACCCTGCTGGAATCGATCATCA 897
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 842 TAATCCTCCATTGAAGATAAGATTCATTGACAACACCGACCCTGCTGGAATTGATCATCA 901
Query 898 GATCGCACAACTTGGGCCAGAGCTTGCATCAACTTTAGTAATTGTCATCTCAAAGAGTGG 957
||| |||||||||||||||||||| || || ||||||||| |||||||||||||||||||
Sbjct 902 GATTGCACAACTTGGGCCAGAGCTGGCCTCGACTTTAGTAGTTGTCATCTCAAAGAGTGG 961
Query 958 AGGTACTCCTGAAACTAGAAATGGACTATTGGAAGTGCAGAAAGCATTCCGTGAAGCTGG 1017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 962 AGGTACTCCTGAAACTAGAAATGGACTACTGGAAGTGCAGAAAGCATTCCGTGAAGCTGG 1021
Query 1018 TCTGAATTTCGCAAAACAGGGTGTTGCAATAACCCAAGAAAACTCATTGCTGGATAATAC 1077
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1022 TCTGAATTTCGCAAAACAGGGTGTTGCAATAACCCAAGAGAACTCATTACTGGATAATAC 1081
Query 1078 GGCAAGAATTGAAGGTTGGCTAGCTAGATTTCCTATGTACGACTGGGTGGGTGGAAGAAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GGCAAGAATTGAAGGTTGGCTAGCTAGATTTCCTATGTACGACTGGGTGGGTGGAAGAAC 1141
Query 1138 ATCAATAATGTCTGCAGTTGGTCTGCTTCCAGCAGCACTACAGGGGATCAATGTTAGGGA 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1142 ATCAATAATGTCTGCAGTTGGTCTGCTTCCAGCAGCACTACAGGGGATTAATGTTAGGGA 1201
Query 1198 GATGCTTACTGGTGCTGCTTTAATGGATGAGGCTACTAGGACAACTTCGATCAAGAATAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GATGCTTACTGGTGCTGCTTTAATGGATGAGGCTACTAGGACAACTTCGATCAAGAATAA 1261
Query 1258 CCCTGCAGCGCTCTTAGCTATGTGTTGGTACTGGGCTTCCAATGGCGTTGGCTCCAAGGA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1262 CCCTGCAGCGCTCTTAGCTATGTGTTGGTACTGGGCTTCCAATGGCGTTGGTTCCAAGGA 1321
Query 1318 TATGGTTGTCCTTCCTTACAAGGATAGCTTATTACTATTTAGTCGGTATCTGCAGCAGCT 1377
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1322 TATGGTTGTCCTTCCTTACAAGGATAGCTTATTGCTATTTAGTCGGTATCTGCAGCAGCT 1381
Query 1378 GGTAATGGAATCACTAGGAAAGGAGTTTGATCTTGACGGTAACACTGTTAATCAAGGGTT 1437
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GGTCATGGAATCACTAGGAAAGGAGTTTGATCTTGACGGTAACACTGTTAATCAAGGGTT 1441
Query 1438 AACTGTGTATGGAAATAAGGGGAGCACAGATCAGCACGCCTACATTCAACAGCTGAGAGA 1497
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AACTGTGTATGGAAATAAGGGAAGCACAGATCAGCACGCCTACATTCAACAGCTGAGAGA 1501
Query 1498 TGGTGTGCACAATTTCTTTGCAACCTTCATAGAAGTGTTACGGGACAGACCCCCAGGTCA 1557
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1502 TGGTGTGCACAATTTCTTTGCAACCTTCATAGAAGTGTTACGGGACAGACCCCCTGGTCA 1561
Query 1558 CGATTGGGAGCTTGAGCCAGGTGTCACTTGTGGAGACTACCTCTTTGGGATGCTACAGGG 1617
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1562 CGATTGGGAGCTTGAGCCAGGTGTCACTTGTGGAGACTATCTCTTTGGGATGCTACAGGG 1621
Query 1618 AACAAGATCTGCTTTATATGCAAACGGTAGAGAATCCATCAGTGTTACTATCGAGGAAGT 1677
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1622 AACTAGATCTGCTTTATATGCAAACGGTAGAGAATCCATCAGTGTTACAATCCAGGAAGT 1681
Query 1678 GACACCAAGATCTGTTGGGGCTCTTATAGCTCTTTATGAAAGAGCGGTTGGATTATATGC 1737
|||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 1682 GACACCAACATCTGTTGGGGCTATTATAGCTCTTTATGAAAGAGCTGTTGGTTTATATGC 1741
Query 1738 CTCAATTGTGAACATAAATGCTTACCACCAACCCGGTGTGGAAGCCGGGAAAAAGGCAGC 1797
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1742 CTCAATTGTGAACATAAATGCTTACCACCAACCCGGTGTGGAAGCTGGGAAAAAGGCAGC 1801
Query 1798 AGCAGAAGTTCTGGCCCTGCAAAAGCGGGTATTGTCAGTTCTTAATGAAGCCACTTGTAA 1857
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AGCAGAAGTTCTCGCCCTGCAAAAGCGGGTATTGTCAGTTCTTAATGAAGCCACTTGTAA 1861
Query 1858 AGATCCGGTAGAACCATTGACACTGGAAGAGATAGCTGATCGTTGCCATGCTCCTGAGGA 1917
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1862 AGATCCGGTAGAGCCATTGACACTGGAAGAGATAGCTGATCGTTGTCATGCTCCTGAGGA 1921
Query 1918 AATAGAAATGATATACAAGATCATAGCGCACATGTCTGCAAATGACAGAGTTCTGATAGC 1977
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1922 AATAGAAATGATATACAAGATCATAGCGCACATGTCTGCAAACGACAGAGTTCTGATAGC 1981
Query 1978 TGAAGGAAACTGTGGATCGCCACGAAGTATCAAAGTGTATCTGGGCGAGTGCAATGTGGA 2037
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1982 AGAAGGAAACTGTGGATCGCCACGAAGTATCAAAGTGTATTTGGGCGAGTGCAATGTGGA 2041
Query 2038 TGACCTGTACGCATAAGAAA-CCCAACACTTTCTCAAAACTCCAAACACTCATTCTCTCC 2096
|||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 2042 TGACCTGTACGCATAACAAAACCCAACACTTTCTCAAA-CTCCAAACTCTCATTCTCTCC 2100
Query 2097 ATTCCTTATTTATTTCTGCCATGTCTATGATTTTGAAAAAGAAAAAGATTGCAATAAGAG 2156
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 ATTCCTTATTTCTTTCTGCCATGTCTATGATTTTGAAAAAGAAAAAGATTGCAATAAGAG 2160
Query 2157 CCAGGAAACACTTGTGTACTTGTTTTGAAATAAAGATAATTTCAGAATGTTGCAAATGTT 2216
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2161 CCAGGAAACACTTGTGTACTTGTTTTGAAATAAAGATAATTTCAGAATGTTACAAATGTT 2220
Query 2217 GATTGTAATGATAACATTGGTGAG-GATTCATCAATCAATCAGGCTCATGTG 2267
|||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 2221 GATTGTAATGATAACATTGGAGATAGATTCATCAATCAAGCAGGCTCATGTG 2272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5