BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492383
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24590.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1495 0.0
AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 505 4e-142
> AT4G24590.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G49710.3);
Has 105 Blast hits to 105 proteins in 26 species: Archae -
0; Bacteria - 0; Metazoa - 8; Fungi - 3; Plants - 85; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr4:12696538-12698218
FORWARD LENGTH=1021
Length=1021
Score = 1495 bits (809), Expect = 0.0
Identities = 959/1028 (93%), Gaps = 23/1028 (2%)
Strand=Plus/Plus
Query 1 CTTTTTCCGGTGGAAATAAAACAAACAAATAGGTCGCAAGTTGGAAAATTGTGGAGGAGA 60
||||||||||||||||||||||||||||||| | | || | | ||||||||||||||
Sbjct 1 CTTTTTCCGGTGGAAATAAAACAAACAAATA--TTG-TAGGTCG-CAATTGTGGAGGAGA 56
Query 61 ACAATC-AATTCATCTTCTTCTCTTTCACAAATTTC-G-GTAAAACTTTCCGATTCCATG 117
|| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 57 ACCATCAAATTCATCTTCTTCTCTTTCACAAATTTCAGCCTAAAACTTTCCGATTCCATG 116
Query 118 GAAATCGAAGTCTCTTGCTCGACTCATGATGCCGACAGCAAAGGAAACCGCATCGATTTG 177
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 117 GAAATCGAAGTCTCTTGCTCGACTCATGATGCCGAAACCAAAGGAAACCGCATCGATTTG 176
Query 178 GATAGTATCCGTGTCAAGCGGAAGACGTTGCAGAATCTGCTCGAGGATTGCCAGAGAGCT 237
|||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 177 GATAGTATTCGTGTAAAGCGAAAGACGTTACAGAATCTGCTCGCGGATTGCCAGAGAGCT 236
Query 238 CTTGAGCTGCTAGAACTTCCCGGCGATGAAAACGGTGGCGAACAGAGTGAATCACCggag 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTGAGCTTCTAGAACTTCCCGGCGATGAAAACGGTGGCGAACAGAGTGAATCACCGGAG 296
Query 298 gaggaggaggaggaggaATCGGACAGGGAAGAGTCGTCTTCTTCCGATCCAGGAGATCCT 357
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 297 GAGGAGGAGGAGGAAGAATCGGACAGGGAAGAACCGTCTGCTTCCGATCCAGGAGATCCT 356
Query 358 GAAGCTGATAAATTTTATGATCTCATCAAATCTAGAGTTGAATGTCATGACTTTCGTGAA 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 GAAGCTGATAAATTTTATGATCTCATCAAATCTAGAGTTGAATGTAATGACTTTCGTGAA 416
Query 418 AAGATAGAATTAGCTCAAGTTTCAGTTCCCCAAGATCTTGCTGAAGATAGTAGCTCTTGG 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 AAGATAGAATTAGCTCAAGTTTCAGTTCCCCAAGTTCTTGCTGAAGATAGTAGCTCTTGG 476
Query 478 GATGTAGTTAGTGAAGATGATTTATGGGGTGAGGAAGGTATGGGTCAAATGGAAGATGAT 537
|||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||
Sbjct 477 GATGTAGTTAGTGAAGATGATTTATGGGATGAGGAATGTGTGGGTCAAACGGAAGATGAT 536
Query 538 TATGTTGTTGTTAGGGAAGAAGATATAGCAGACGGTATTGCTTGTTTCATGGCTACATAT 597
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 537 TATGTCGTTGTTAGGGAAGAAGATATAGCTGACGGTATTGCTTGTTTCATGGCTACTTAT 596
Query 598 TTATCATCCCTTAAGCAGACAAAGGATATATCACCTGATCAGCTTCAGAAAGCACTTAGC 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTATCATCCCTTAAGCAAACAAAGGATATATCACCTGATCAGCTTCAGAAAGCACTTAGC 656
Query 658 ACGATGTTTTCAGTGAAGAAGAGGAAGGGGAAGCTTCGCAAGGCATGGGAGGGAAGTAAA 717
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 657 ACGATGTTTTCAGTGAAGAAAAGAAAGGGGAAGCTTCGTAAGGCATGGGAGGGAAGTAAA 716
Query 718 GTTATTTACAACGTAGCATCATGGAGCGCAACCGCGATAGGGATATATCAAAACCCTATG 777
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 717 GTTATTTACAACGTAGCATCATGGAGCGCAACTGCGATAGGGATATATCAAAACCCGATG 776
Query 778 ATACTGAGTATTGCATCCAAAGCATTCTGGATGTCGTGCCAGGCTATATCAAAGCTTGTC 837
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 777 ATCCTGAGTATTGCATCCAAAGCATTCTGGATGTCGTGCCAGGCTATATCGAAGCTTGTC 836
Query 838 TGAACAAATCTCACATGATGATCATATAAGTCTACAACAAGCCTTGGCAATGTTTTATAT 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 TGAACAAATCTCACATGATGATCATATAAGTCTACAACAAGACTTGGCAATGTTTTATAT 896
Query 898 CTG-TACAAATGCCAT-T--TGT-----TGCC-TCTTCTAG--TCTTCTCTCTGTGTGTG 945
| | |||| || | ||| |||| | || | | |||||||||||||||||
Sbjct 897 ATCATT-AAATTT-ATCTCCTGTACAAATGCCAT-TTGTTGCCTCTTCTCTCTGTGTGTG 953
Query 946 TTATG-CTCCTCTCTTTTCCATTGTATTCTCAACATGCAATTTTAGTGATTGATTTGATC 1004
||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 954 TTATGGCTCCTCTCTTTTCCATTGTATCCTCAACATGCAATTTTAATGATTGATTTGATC 1013
Query 1005 TTAATTTG 1012
||||||||
Sbjct 1014 TTAATTTG 1021
> AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G24590.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:20195410-20197353 FORWARD LENGTH=1024
Length=1024
Score = 505 bits (273), Expect = 4e-142
Identities = 569/707 (80%), Gaps = 39/707 (6%)
Strand=Plus/Plus
Query 155 GCAAAGGAAACCGCATCGATTTGGATAGTATCCGTGTCAAGCGGAAGACGTTGC-AGAAT 213
|||||||||| || |||||| ||||| ||| |||||||||||||| || |||| || |
Sbjct 171 GCAAAGGAAAACGAATCGATAAGGATAATATTCGTGTCAAGCGGAAAACTTTGCAAG-CT 229
Query 214 CTGCTCGAGGATTGCCAGAGAGCTCTTGAGCTGCTAGAACTT-CCCG--G-C-G--ATGA 266
||||| | |||||||||||||| || ||| | || ||||| ||| | | | |||
Sbjct 230 TTGCTCAATGATTGCCAGAGAGCCCTCGAGTTATTA-AACTTAGCCGAAGTCAGTTCTGA 288
Query 267 AAACGGTGGCGAACA-GAGT-GAATCACCggaggaggaggaggaggag-ga-ATCG-GA- 320
| ||| | ||| | || | || |||||| || | ||| | || | | | | ||
Sbjct 289 AGACGAT---GAAGATGA-TAAAAGCACCGG-CGA-G-GGAAGTGG-GTCACA-AGAGAG 339
Query 321 CAGGGAAG-AGTCGTCTTCTTCCGATCCAGGAGATCCTGAAGCTGATAAATTTTATGATC 379
||||| || ||| ||||||||||||| || |||||||||||||||| |||| |||||||
Sbjct 340 CAGGGGAGAAGT-TTCTTCTTCCGATCGAGAAGATCCTGAAGCTGATGAATTATATGATC 398
Query 380 TCATCAAATCTAGAGTTGAATGTCATGACTTTCGTGAAAAGATAGAATTAGCTCAAGTTT 439
|||||||||| || ||||||||| ||||||| | ||||||||| || | ||| || ||||
Sbjct 399 TCATCAAATCCAGGGTTGAATGTGATGACTTCCTTGAAAAGATTGAGTCAGCCCAGGTTT 458
Query 440 CAGTTCCCCAAGATCTTGCTGAAGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGAT- 498
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CAGCGCCGCAACATCTTGCTGAAGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGATC 518
Query 499 TTATGGGGTGAGGAAGGTATGGGTCAAATGGAAGATGATTATGTTGTTGTTAGGGAAGAA 558
|| |||| ||| ||| |||| ||||| |||||| |||||||| ||||||| ||||||
Sbjct 519 TT-TGGGATGATGAAACCATGGCTCAAAGGGAAGAAGATTATGTCCTTGTTAGAGAAGAA 577
Query 559 GATATAGCAGACGGTATTGCTTGTTTCATGGCTACATATTTATCA-TCCCTTAAGCAGAC 617
||||||||||| || ||||| |||||||||||||| |||||| || || |||||||||||
Sbjct 578 GATATAGCAGAGGGCATTGCATGTTTCATGGCTACTTATTTA-CAATCACTTAAGCAGAC 636
Query 618 AAAGGA-TAT-ATCACCTGATCAGCTTCAGAAAGCACTTAGCACGATGTTTTCAGTGAAG 675
|||||| | | | | ||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 637 AAAGGACT-TGA-CTCCTGAGCAGCTTCAGAAAGCACTTAGCAGGATGTTCTCAGTGAAG 694
Query 676 AAGAGGAAGGGGAAGCTTCGCAAGGCATGGGAGGGAAGTAAAGTTATTTACAACGTAGCA 735
|| || |||||||| ||||| || || ||||| |||||||| ||| ||||||||||||
Sbjct 695 AATAGAAAGGGGAAACTTCGGAAAGCCTGGGATGGAAGTAAGGTTGCTTACAACGTAGCG 754
Query 736 TCATGGAGCGCAACCGCGATAGGGATATATCAAAACCCTATGATACTGAGTATTGCATCC 795
|||||||||||||| | |||||||| ||||||||||| |||| ||||| |||||||
Sbjct 755 TCATGGAGCGCAACTGTTATAGGGATCTATCAAAACCCCGTGATCCTGAGGGTTGCATC- 813
Query 796 AAAG-CATTCTGGATGTCGTGCCAGGCTA-TATCAAAGCTTGTCTGA 840
|||| | || ||| ||| || || | || |||| ||||| || |||
Sbjct 814 AAAGGCCTTTTGGGCGTCATGTCATG-TAATATCGAAGCTCGTTTGA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5