BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492389
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24540.1 | Symbols: AGL24 | AGAMOUS-like 24 | chr4:12670965-... 1585 0.0
> AT4G24540.1 | Symbols: AGL24 | AGAMOUS-like 24 | chr4:12670965-12674072
REVERSE LENGTH=1053
Length=1053
Score = 1585 bits (858), Expect = 0.0
Identities = 986/1045 (94%), Gaps = 20/1045 (2%)
Strand=Plus/Plus
Query 1 tctctctctttctctctcACTCACACATTAGGGAATCAAA-AGCTACCAGAAAAACCttt 59
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||
Sbjct 21 TCTCTCTCTTTCTCTCTCACTCACACATTAGGGAGT-AAACAGCTACCAGAAAAACC-TT 78
Query 60 ttttATCTTCTCACGAATTTAATAAAGTAGGTGCTGAGATTGCAA-AACCTAATCCAAGA 118
|||||||||||||| ||||||||||||| ||||||||||||| || ||| ||||||||||
Sbjct 79 TTTTATCTTCTCACAAATTTAATAAAGTGGGTGCTGAGATTG-AATAACGTAATCCAAGA 137
Query 119 T-ATTCAA-AGAAAGGGTAGGCAAGATTCAAGAACAGTAGTGAA--AGAGATCTGGTAAA 174
| | ||| | | | |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 138 TCCTCCAACTCACA-GAAAGGC-AGATTCAAGAACAGTAGTGAAGGAGAGATCTGGTAAA 195
Query 175 ATGGCGAGAGAGAAGATAAGGATAAAGAAGATTGATAACATAACAGCGAGACAAGTTACT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATGGCGAGAGAGAAGATAAGGATAAAGAAGATTGATAACATAACAGCGAGACAAGTTACT 255
Query 235 TTCTCTAAGAGAAGAAGAGGAATCTTTAAGAAAGCCGATGAACTTTCAGTTCTTTGCGAT 294
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 256 TTCTCAAAGAGAAGAAGAGGAATCTTCAAGAAAGCCGATGAACTTTCAGTTCTTTGCGAT 315
Query 295 GCTGATGTTGCTCTCATCATCTTCTCTGCCACTGGAAAGCTCTTCGAATTCTCTAGCTCA 354
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 316 GCTGATGTTGCTCTCATCATCTTCTCTGCCACCGGAAAGCTCTTCGAGTTCTCCAGCTCA 375
Query 355 AGAATGAGAGACATATTGGGAAGGTATAGTCTTCATGCAAGTAACATCAACAAATTGATG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAATGAGAGACATATTGGGAAGGTATAGTCTTCATGCAAGTAACATCAACAAATTGATG 435
Query 415 GATCCACCTTCTACTCATCTCCAGCTTGAGAATTGTAACCTCTCCAGACTAAGTAAGGAA 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 436 GATCCACCTTCTACTCATCTCCGGCTTGAGAATTGTAACCTCTCCAGACTAAGTAAGGAA 495
Query 475 GTCGAAGACAAAACCAAGCAGCTACGGAAACTGAGAGGAGAGGATCTTGATGGATTGAAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GTCGAAGACAAAACCAAGCAGCTACGGAAACTGAGAGGAGAGGATCTTGATGGATTGAAC 555
Query 535 TTAGAAGAATTGCAGCGGCTAGAGAAACTGCTTGAATCCGGACTTAGCCGTGTCTCTGAA 594
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 556 TTAGAAGAGTTGCAGCGGCTGGAGAAACTACTTGAATCCGGACTTAGCCGTGTGTCTGAA 615
Query 595 AAGAAGGGCGAGTGTGTGATGAGCCAGATTT-CTTCACTTGAGAAACGGGGATCGGAATT 653
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 616 AAGAAGGGCGAGTGTGTGATGAGCCAAATTTTCT-CACTTGAGAAACGGGGATCGGAATT 674
Query 654 GGTGGATGAAAATAAGAGACTGAGGGATAAACTAGAAACGTTGGAAAGGGCTAAACTGAC 713
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 675 GGTGGATGAGAATAAGAGACTGAGGGATAAACTAGAGACGTTGGAAAGGGCAAAACTGAC 734
Query 714 GACGTTTAAGGAGGTTTTGGAGACAGAGTCGGTGACCACAAATGTGTCAAGCTACGACAG 773
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GACGCTTAAAGAGGCTTTGGAGACAGAGTCGGTGACCACAAATGTGTCAAGCTACGACAG 794
Query 774 TGGAGCTCCCCTTGAGGATAACTCCGACACTTTCCTGAAGCTTGGGCTTCCATCTTGGGA 833
|||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 795 TGGAACTCCCCTTGAGGATGACTCCGACACTTCCCTGAAGCTTGGGCTTCCATCTTGGGA 854
Query 834 ATGAACCTGAGAGAGAGAAAGATCCAGCAGAGTTGACTTCGATGGAAGCCCACAAAATAT 893
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 855 ATGAATCTGAGAGAGAGAAAGATCCAGCAGAGTTGACTTCGATGGAAGCCCACAAA-TAT 913
Query 894 TAAGTCTAGTCTACCTTTTCCCTTTCTTTCCTTTGAAATAAGTATTGaaaaaaaaTTGAG 953
|||||||| | | |||||||||||||| ||||||| ||||| |||||||| |||||||
Sbjct 914 TAAGTCTA--C--C-TTTTCCCTTTCTTTTCTTTGAA-TAAGTGTTGAAAAAGAATTGAG 967
Query 954 ATGGGAAGAATGAATTCTCATTGCATTGCAGAGAAGCAAGTTTCAGACATTGTACGTGTT 1013
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 968 ATGGGAAGGATGAATTCTCATTGCATTGCAGAGAAGCAAGTTTCAGATATTGTACGTGTT 1027
Query 1014 ATTGGTTTTTATAACTGTTTTGCAC 1038
|||||| ||||||||| ||||||||
Sbjct 1028 ATTGGTCTTTATAACTATTTTGCAC 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5