BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492392
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24510.1 | Symbols: CER2, VC2, VC-2 | HXXXD-type acyl-transf... 2032 0.0
> AT4G24510.1 | Symbols: CER2, VC2, VC-2 | HXXXD-type acyl-transferase
family protein | chr4:12660749-12662656 FORWARD LENGTH=1565
Length=1565
Score = 2032 bits (1100), Expect = 0.0
Identities = 1353/1472 (92%), Gaps = 29/1472 (2%)
Strand=Plus/Plus
Query 1 AAACACCCAAATCCCACCTACATTTAATGTTGTCGTCACCGAAACTGTTGTCTCAACTGT 60
||| |||||||||||||| ||||||||||||| |||||| ||||| ||| || |||||||
Sbjct 1 AAAGACCCAAATCCCACCCACATTTAATGTTGCCGTCACGGAAACAGTTTTCCCAACTGT 60
Query 61 CCTAAACCAGTGATACCCATAACTATTCTGAACTCAACTTTCTTTCCAAACTCAATTCTT 120
|||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| |||
Sbjct 61 CCTAAATCAGTGATACCCATGCCTATTCTGAACTCAACTCTCTTTCGAAACTCAATCCTT 120
Query 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCCCTCAGAAAGAA-AA 179
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCTCTCACAAA-AATAA 179
Query 180 AATGGAGAGAAGCCCAGTGACCAGTGCCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AATGGAGGGAAGCCCAGTGACCAGTGTCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239
Query 240 AGGCGAGAACAAGCCACGACTGTTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGTGAGAACAAGCCACGACAGCTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299
Query 300 CCGAGCTGTCTACTTCTTCAAGGGTATACGTGACTTCACTGTCGCCGAATTGAAGAACAC 359
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 300 CCGAGCCGTCTACTTCTTCAAGGGTGCACGTGACTTCACTGTCGCCGACGTGAAGAACAC 359
Query 360 CATG--T--T-T--A--CTCTACTCCAGTCTTATCACCACGTCTCAGGTCGGATCCGGAT 410
|||| | | | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CATGTTTACTCTACAGTCTCTACTCCAATCTTATCACCACGTCTCAGGTCGGATCCGGAT 419
Query 411 GTCCGACAACG---A--TC-CTTCAGCTCCTGCCATACCTTACATTCGCTGCAACGACAG 464
||||||||||| | | |||||||| | |||||||||||||||||||||||||||||
Sbjct 420 GTCCGACAACGACAACGACACTTCAGCTGCAGCCATACCTTACATTCGCTGCAACGACAG 479
Query 465 TGGCATGCGCATCGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGACTT 524
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGGCATACGCGTGGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGAGTT 539
Query 525 GGACGACCGTTCCATTGACCACCGGTTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 584
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GGACGACCGTTCCATTGACCACCGATTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 599
Query 585 TACCTTCTCTCCACTTGTTTTCGTCCAGATAACTCAGTTTAAATGTGGTGGTCTCTCTAT 644
||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||| |||
Sbjct 600 TACCTTCTCGCCACTCGTTTTCCTCCAGATAACTCAGTTTAAATGTGGTGGGCTCTGTAT 659
Query 645 TGGGTTGAGTTGGGCCCATGTTCTAGGAGATTTATTTTCAGCAGCAACTTTCATGAAAAC 704
||||||||||||||||||| |||| ||||| | ||||||||| |||| |||||||||||
Sbjct 660 TGGGTTGAGTTGGGCCCATATTCTTGGAGACGTGTTTTCAGCATCAACGTTCATGAAAAC 719
Query 705 ACTTGGACAGCTGATGTCAGGTCATGGCCCAACAAAACTGGTTTACCCGGAAACCCCTGA 764
||||||||||||| | || ||||||| ||||||||||| |||||||||| ||||||| ||
Sbjct 720 ACTTGGACAGCTGGTATCGGGTCATGCCCCAACAAAACCGGTTTACCCGAAAACCCCCGA 779
Query 765 ACTGACCTCTCATGCTC---ATAATGGTGAAGCTATTTCCATTGAAAAGATAGAATCGGT 821
||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 780 ACTAACCTCTCATGCTCGTAATGATGGTGAAGCTATTTCCATTGAAAAGATAGATTCGGT 839
Query 822 TGGTC-AGTATTGGTTACTTACAAATAAATGCAAGATGGGAAGATACATTTTTAATTTTA 880
||| | |||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 840 TGG-CGAGTATTGGTTACTTACCAATAAATGCAAGATGGGGAGACACATTTTTAATTTTA 898
Query 881 GCCTCAACCAAATTGATCGTTTGATGGCCAAGTACACCACACGAGACCAACCTTTCTCGG 940
|||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 899 GCCTCAACCACATTGATAGCTTGATGGCCAAGTACACCACGCGAGACCAACCTTTCTCGG 958
Query 941 AGGTTGATATTTTGTATGCATTGATATGGAAGGCCCTACTGAATATCCGCGGCAAAACAA 1000
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 959 AGGTTGATATTTTGTATGCATTGATATGGAAGTCGCTACTGAATATCCGCGGCGAAACAA 1018
Query 1001 ACACAAATGTTATAACAATTTGTGACCGTAAAAAATCTTCAACCTGTTGGAATGACGACT 1060
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1019 ACACGAATGTTATAACAATTTGTGACCGTAAAAAGTCTTCAACCTGTTGGAACGAGGACT 1078
Query 1061 TGGTAATAAGCATAGTGGAAAAGAATGACGAAATGATTGGGATATCCGAACTAGCTGCCC 1120
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1079 TGGTAATAAGCGTAGTGGAAAAGAATGACGAAATGGTTGGGATATCCGAACTAGCTGCAC 1138
Query 1121 TGATCGCGGGTGAAAAAAGAGAAGAAAACGGTGTGATCAAGAGGATAATAGAAGAAGATA 1180
|||| || ||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 1139 TGATTGCTGGTGAAAAAAGAGAAGAAAACGGTGCGATCAAGAGGATGATAGAACAAGATA 1198
Query 1181 AAGGGTCTTCAGATTTTATCACGTACGGTGCAAATTTAACGTTTGTGAATCTTGACATG- 1239
|||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1199 AAGGCTCTTCGGATTTTTTCACGTACGGTGCAAATTTAACGTTTGTGAATCTTG--ATGA 1256
Query 1240 -ATAGATATGTATGAAATTGAGATCAAAGGGGGGAAGCCAGATTTCGTAAACTACACGAT 1298
||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1257 AATAGATATGTATGAACTTGAGATCAACGGAGGGAAGCCGGATTTCGTAAACTACACGAT 1316
Query 1299 TCATGGGGTTGGGGACAAAGGTGTTGTTTTGGTTTATCCCAAGCAAAACTTTGCAAGGAT 1358
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1317 TCATGGGGTCGGAGACAAAGGTGTTGTTTTGGTTTTTCCCAAGCAAAACTTTGCAAGGAT 1376
Query 1359 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1436
Query 1419 GATTATGTAACTTTGTTGTATCTTGTTCTTGT 1450
|||||| ||||||||| ||||| |||||||
Sbjct 1437 GATTATATAACTTTGT---ATCTTCTTCTTGT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5