BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492396
Length=2318
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl tran... 3415 0.0
AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl tran... 1026 0.0
> AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl transferase
alpha subunit 1 | chr4:12655059-12658336 REVERSE LENGTH=2427
Length=2427
Score = 3415 bits (1849), Expect = 0.0
Identities = 2083/2195 (95%), Gaps = 19/2195 (1%)
Strand=Plus/Plus
Query 134 ACACTCTCGCATCTCTCACATTCGTCGGAGAAGAATGCACGGTCGTCCAAGGAAGGCTTC 193
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 86 ACACTGTCGCATCTCTCACAGTCGTCGGAGAAGAATGCACGGTCGTCCAAGGAATGCTTC 145
Query 194 TAAGCCAGAAGAGGAAGCTGCTTCAGCTGCTAAAGCGGTTAAGCTTCGGTCTCTCCAGTC 253
|||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 146 TAAGCCAGAAGAGGAAGCAGCTTCAGCTGCTAAAGCTGTTCAGCTTCGCTCTCTCCAGTC 205
Query 254 TCAGTTTATGACTAATCATCACGATAAAATATATACCAATGAAGCTATTGAGTTAAGTAC 313
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 206 TCAGTTTATGACGAATCATCACGATAAAATTTATACCAATGAAGCTATTGAGTTAAGCAC 265
Query 314 GAAGCTTCTCGAAATCAATCCGGAGGCGTACACGGCTTGGAACTACCGGAAGCTTGCTGT 373
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 266 GAAGCTTCTAGAAATCAATCCGGAGGCGTACACCGCATGGAACTACCGGAAGCTTGCTGT 325
Query 374 GGAGGATTGCCTTTCCAGAATTGAGTCTGATCCAAACTTGGTCAACTCAATTCTTGATGA 433
||||||| ||||| ||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 326 GGAGGATCGCCTTGCCAGAATTGAGCCTGATCCAAACTTGGTCAGCGCAATTCTTGATGA 385
Query 434 AGAACTCAGAGTGGTAGAAAGTGCTTTGAGGCAGAATTTCAAGTCATATGGTGCTTGGCA 493
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 386 AGAACTCAGAGTGGTAGAAAGTGCTTTGAGGCAGAATTTCAAGTCCTATGGTGCTTGGCA 445
Query 494 TCATCGAAAGTGGGTTTTGAGTAAAGGGCATTCCTCCATAGGGGATGAATTGAAACTTTT 553
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 446 TCATCGAAAGTGGGTTTTGAGTAAAGGGCATTCATCCGTAGGGAATGAATTGAGACTTTT 505
Query 554 GGACAAATTCCAGAGGCTGGATTCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT 613
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGAAAAATTCCAGAAGCTGGATTCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT 565
Query 614 TGTAGAGCTAACCAACAGGTCAGAACAGGATGAGTTGCACTATACAGATGATATGATCAA 673
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 TGTAGAGCTAACCAACAGATCAGAACAGGATGAGTTGCAGTATACAGATGATATGATCAA 625
Query 674 TAACAATTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTTGCT 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 626 TAACAATTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTTG-T 684
Query 734 T-GCACAAAATGCTGATGGGTTTATGCCAAATGA-AAGGATTCCTGACGAATATGACCTT 791
| |||||||||||||||||||||||||||||| | || ||||||||| ||||||||| ||
Sbjct 685 TGGCACAAAATGCTGATGGGTTTATGCCAAAT-ATAAAGATTCCTGAGGAATATGACTTT 743
Query 792 GTACATTCAGCTATTTTTACGGACCCAGATGACCAAAGTGGCTGGTTTTATCATCTTTGG 851
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 744 GTACATTCGGCTATTTTTACGGAACCAGATGACCAAAGTGGCTGGTTTTATCATCTTTGG 803
Query 852 CTTCTTGATCAAACTCTTAATGTGGAGACTCCTCTTCTCACTT-CTGCATGGCCTTCCCA 910
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 804 CTTCTTGACCAAACTCTTAATGTGGAGACTCCTCTTCTCACTTCCT-CATGGCCTTCACA 862
Query 911 TGGTTCAACTATCAGTCTATCTGGAGCTGGGTGCTTGAATGGCTCTTCTTCTAAGTTCAC 970
|||||||| ||||| ||| ||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 863 TGGTTCAAGTATCATTCTGTCTGGAGCTGGGTGCTTGAGTGGCTCTTCATCTATGTTCAC 922
Query 971 TACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTGTTGG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTGTTGG 982
Query 1031 TGGAGTAAGCTCATCTACTGTTACAACTGATTCTGAACTAAAAGGAAACG-GGGACCTGG 1089
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |
Sbjct 983 TGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAACGAGGG-CCTTG 1041
Query 1090 TTTGGGAACCAATTTCGTATAAAAATTCTCAGGTGTCCTGTGTATGGGTTACTCATCTGA 1149
|||||||||||||| || | |||||||||||||||||||||||||||||| ||| |||||
Sbjct 1042 TTTGGGAACCAATTCCGAACAAAAATTCTCAGGTGTCCTGTGTATGGGTTGCTCGTCTGA 1101
Query 1150 AATATGTCAGTTCAGATCCTTGCGAATACAAAGTGAAGATCAGAGTTGGGAACTCTCCAG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 AATATGTCAGTTCAGATCCTTGCGAATACAAAGTGAAGATCAGAGTTGGGAACTCTCCAG 1161
Query 1210 GAATCGTTTCTTCCAGAGGACATAACTTCAGCGCACCTTATGAGTTTGTCTTTACAGCCC 1269
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1162 GAATCGTTTCTTCCAGAGGATATAACTTCAACGCACCTTATGAGTTTGTCTTTACAGCCC 1221
Query 1270 ATGTTCATGATACCGTCAAAGATTCTCAAGAAGGCATTGTTTCATGGACGGATGGTTTTG 1329
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1222 ATGTTCATGATACCGTCGAAGATTCTCAAGAAGGCATTGTTTCATGGACGGATGGATTTG 1281
Query 1330 ATATTTGGGATGCGAAGTCCAAGGATTTGAACTCTCTTATCACCTTGGATCGGTTAGAGG 1389
||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| | |
Sbjct 1282 ATATTTGGGATGCGAAGTCAAAGGATTTGAATTCTCTTGTCACCTTGGATCGGTTAAATG 1341
Query 1390 CTGAGATAGATTTTAAATGGCGTCAGGAAGCTATAGATTCTGAGGTTGAATGTTTCGGTA 1449
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTGAGATGGATTTTAAATGGCGTCAGGAAGCTATAGATTCTGAGGTTGAATGTTTCGGTA 1401
Query 1450 TACTGTCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGGCTTTTGATGGCTCGTGAAG 1509
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TACTGCCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGGCTTTTGATGGCTCGTGAAG 1461
Query 1510 CTATGGTATCGGATGATGCTGTTAAGGGTGTTCGCTATGAAGAAATCCTCCAGCTGTATA 1569
|||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1462 CTATGGTATCGGATGATGCTGTCAAGGGTGTTCACTATGAAGAAATCCTTCAGCTGTATA 1521
Query 1570 ACGATTTGATGGCGCTGGATTCTTCACATTACCAGTACTACAAGGATGAGCACAGCGTAG 1629
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1522 ACGATTTGATGGCGCTGGATTCTTCACACTACCAGTACTACAAGGATGAGCACAGCAAAG 1581
Query 1630 CTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCCTTGTCAAGACACCTCTTT-CGATAT 1688
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 1582 CTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCTTTGTCAAGACACCT-TTTGCGATAT 1640
Query 1689 AGGGGTATGAACAATCTTGTATGTCTACGGCTAAATAACTTATCACTATCTCGGATAGCC 1748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 AGGGATATGAACAATCTTGTATGTCTACGGCTAAATAACTTATCACTATCTCGGATAGCC 1700
Query 1749 TCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACCTTAGTCACAATGAGCTTCATTCA 1808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACCTTAGTCACAATGAGCTTCATTCC 1760
Query 1809 ACTGAAGGATTAGAGGCAATGCAACTTCTCTCTTGCCTAAATCTGAGTCACAACAGAATC 1868
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1761 ACTGAAGGATTGGAGGCAATGCAACTTCTCTCTTGTCTAAATCTGAGTCACAACAGAATC 1820
Query 1869 CGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTT 1928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTT 1880
Query 1929 TCACACAACCACATTGGCAAGCACTCAGTGGACACAAC-ACGGTACCTTTGTTCTTCACC 1987
||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1881 TCACATAACCACATTGGCAAGCACTCAGTGGACACAACTA-GATACCTTTGTTCTTCACC 1939
Query 1988 GCTCTCTAATTCAGAGT-GGAGTCAGGATGATGTAGGAAGACAGAATCCTGGGTTGGTCA 2046
||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| |
Sbjct 1940 GCTCTCTAATTCAGAGTTGG-GTCAGGATGATGTAGGAAAACAGAATCCTGGATTGGTTA 1998
Query 2047 CCAAATACTGGGATGCGTATTTCGTCCTAAGAGATTTGAATCTGAAACAGTTAGATATAG 2106
| || |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1999 CGAAGTACTGGGATGCGTATTGCGTGTTAACAGATTTGAATCTGAAACAGTTAGATATAG 2058
Query 2107 CAGGAAATGAAATTTCAGGGAACGAATTCAGCTCTTTTGTCCTCCAGATTGTGCCAAAGC 2166
|||||||||||||| ||||| | |||||||||||||||||||||||| |||| |||||||
Sbjct 2059 CAGGAAATGAAATTGCAGGGGAGGAATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGC 2118
Query 2167 TTGTATGGCTCGATGGCCAGAA-A--CTTGGGAATTAGATCATAGGCCAAGTTTTTGTTT 2223
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2119 TTGTATGGCTCGATGGCCAGAAGAAACTTGGGAATTAGATCATAGGCCAAGTTTTTGTTT 2178
Query 2224 ACTTTATCTTTAGATCATCAAATCCCCAAAGCAATTTGGGTTCTCTTGATGATGTTTGTT 2283
|||||| |||| ||||||||||| ||||||||||||| |||| |||||||||| ||||||
Sbjct 2179 ACTTTACCTTTCGATCATCAAATTCCCAAAGCAATTTAGGTTATCTTGATGATCTTTGTT 2238
Query 2284 GTTGTGATACATGTCTTAACAATCTTATTGATGAC 2318
||||||||| | ||||| ||||||||||||||||
Sbjct 2239 GTTGTGATAT-T-TCTTAGCAATCTTATTGATGAC 2271
Score = 63.9 bits (34), Expect = 7e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCTCGATCGACGCCGCAACGTGCTCCATTCAG 37
||||||||||||||||||||||||||||||| |||||
Sbjct 27 CTCTCTCTCGATCGACGCCGCAACGTGCTCCTTTCAG 63
> AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl transferase
alpha subunit 2 | chr5:16740804-16743433 FORWARD LENGTH=2064
Length=2064
Score = 1026 bits (555), Expect = 0.0
Identities = 1330/1682 (79%), Gaps = 142/1682 (8%)
Strand=Plus/Plus
Query 578 CAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGTTGTAGAGCTAACCAACAGGTCAGA 637
||| || ||||| |||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 447 CAGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTTGTGGAGCTAACCAAGACGTCAGA 506
Query 638 ACAGGATGAGTTGCACTATACAGA-TGATATGATCA---ATAACAATTTCAGCAACTATT 693
| ||||||||||||| |||||| | ||||||||||| ||| | ||||| || |||||
Sbjct 507 AGAGGATGAGTTGCAGTATACA-ACTGATATGATCAGTGATATTAGTTTCACCATCTATT 565
Query 694 CTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTT-GCTTGCACAAAATGCTGATGGG 752
|||| |||||| |||||||||||||| | |||||||| | | ||| |||| |||||||||
Sbjct 566 CTGCGTGGCATTATCGTAGTGTACTTGTTTCAAGTTTAG-TGGCAAAAAAGGCTGATGGG 624
Query 753 TTTATGCCAAATGAAAGGATTCCT-GACGAATAT-GACCT-TGTACATTCAGCTATTTTT 809
||||||||||| |||| ||||| | | |||| | || | ||||||| |||||||||
Sbjct 625 TTTATGCCAAAGGAAACGATTCGTCG-TGAAT-TGGA-TTATGTACATAGTGCTATTTTT 681
Query 810 ACG-GACCCAGATG-ACCAAAGTGGCTGGTTTTATCATCTTTGGCTTCTTGATCAAACTC 867
||| | ||| | | |||||||||||||||||| | ||||||||||||||||| |||
Sbjct 682 ACGTTA-GAAGA-GAAACAAAGTGGCTGGTTTTATTACCTTTGGCTTCTTGATCAGACTG 739
Query 868 TTAATGTGGAGACTCCTCTTCTCACTT-CTGCATGGCCTTCCCATGGTTCAACTATCAGT 926
|||| |||||| |||||||| | || || | |||||||| ||||||| | ||||| |
Sbjct 740 TTAAAATGGAGATTCCTCTTCGCTTTTCCT-CGTGGCCTTCAGATGGTTCCATTATCATT 798
Query 927 CTATCTGGAGCTGGGTGCTTGAATG--GC-TCTTCT--T-CTAAGTTCACTACTTTTTGT 980
||||||||| ||| ||||| |||| | |||||| | ||||||| |||||||| |||
Sbjct 799 CTATCTGGACCTGACTGCTTCAATGCCTCTTCTTCTACTACTAAGTTGACTACTTTCTGT 858
Query 981 TCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTGTTGGTGGAGTAAGC 1040
|| ||||| |||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 859 TCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTAAGTGGAGTAAGC 918
Query 1041 TCATCTACTGTTACAACT-GATTCTGAACTAAAAGGAAACGGGGACCTGGTTTGGGAACC 1099
|| || |||||||| | | || |||||||| ||| ||||| |||||||||||
Sbjct 919 TCGTCAACTGTTACTATTGGA-TCTGAACT-----CAAA----GACCTTGTTTGGGAACC 968
Query 1100 AATTTC-G-T-ATAAAAATTCTCAGGT-G--TCCTGTGTATGGGTTACTCATCTGAAATA 1153
| |||| | | | ||||| ||||| || | || ||||| |||||| ||| ||||||||
Sbjct 969 AGTTTCGGATAAGAAAAACTCTCAAGTGGACTCTTGTGTTTGGGTTGCTCGTCTGAAATT 1028
Query 1154 TGTCAGTTCAGATCCTTGCGAATA--C-AAAGTGAAGATCAGAGT--TGG-GA-ACTCTC 1206
|| | || ||| |||||| || | ||| ||| | || ||| || | || |
Sbjct 1029 TGACTGTAGAGAACCTTGC-TTTAGTCGTAAG-GAA-ACCAAAGTCAAGGTCAGCCT-TG 1084
Query 1207 CAGGAATCGTTTCTTCCA-GAGGACATAACTTCAGCGCACCTTATGAGTTTGTCTTTACA 1265
|||||| |||||||||| | ||| |||||| | ||| |||||||||||||| ||||||
Sbjct 1085 GAGGAATTGTTTCTTCCATG-GGATGTAACTTGACCGCTCCTTATGAGTTTGTATTTACA 1143
Query 1266 GC-CCATGTTCATGATACCGTC-AA--AGA--T-T--C-TCAAGAAGGCATTGTTTCATG 1315
| | | ||||||| || ||| || ||| | | | |||||| |||||||||||||
Sbjct 1144 -CTGCGTATTCATGACACTGTCGAAGTAGAGTTGTCACAACAAGAAAGCATTGTTTCATG 1202
Query 1316 GACGGATGGTTTTGATATTTGGGATG----CG-A-AGTCCAAGGATTTGAACTCTCTTAT 1369
||||||||||||||| | |||||||| | | ||| || |||||||| |||| | |
Sbjct 1203 GACGGATGGTTTTGACAATTGGGATGATAATGCACTGTCGAATGATTTGAATTCTC-T-T 1260
Query 1370 CACCTTGGATCGGTTAGAGGCTGAGATAGATTTTAAATGGCGTCAGGAAGCTAT--AGAT 1427
||| | | ||| | ||||| | | |||| | |||||| || ||||||| |||
Sbjct 1261 -ACC---G--C-CTTAAACGCTGATACGGGTTTTGAGTGGCGTAAGAAAGCTATAAAGA- 1312
Query 1428 TCTGAGGTTGAA-TGTTTCGGTA-TACTGTCTGACAGCAAAATTGGAAAGCTCACTCTTG 1485
| ||| ||||| | |||| ||| | || |||||||||||||||||||||||| |||||
Sbjct 1313 T-AGAGATTGAACTTTTTC-GTACT-TTGCCTGACAGCAAAATTGGAAAGCTCATTCTTG 1369
Query 1486 CAAGGCTTTTGATGGCTCGTGAAGCTATGGTATCGGATGATGCTGTTAAGGGTGTTCGCT 1545
||||||||||||||| | | | | || | | ||||| || || ||||| | |
Sbjct 1370 CAAGGCTTTTGATGG--C-T---G--A-GGAAAC-TATGAT-CT-CAAATGGTGTCCATT 1417
Query 1546 ATGAAGAAATCCTCCAGCTGTATAACGATTTGATGGCGCTGGATTCTTCACATTACCAGT 1605
|| ||||||||||||| |||||||||||| | ||||| || ||||||| ||| ||||||
Sbjct 1418 ATAAAGAAATCCTCCAACTGTATAACGATCTAATGGCTCTTGATTCTTGGCATAACCAGT 1477
Query 1606 ACTACAAGGATGAGCACAGCGTAGCTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCCT 1665
|||||||||||||||||||||||||| | ||||||||||||||||||| | |||||||
Sbjct 1478 ACTACAAGGATGAGCACAGCGTAGCTCTAATCCACAAGGTGACTTCAAGAACTGAATCCA 1537
Query 1666 TGTCAAGACACCTCTTTCGATATAGGGGTATGAACAATCTTGTATGTCTACGGCTAAATA 1725
|||| |||||||||||||| || ||| |||||||||| || ||||| || |||| ||||
Sbjct 1538 TGTCCAGACACCTCTTTCGGTACAGGAATATGAACAATATTATATGTTTAAGGCTCAATA 1597
Query 1726 ACTTATCACTATCTCGGATAGCCTCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACC 1785
||||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| |
Sbjct 1598 ACTTAACACTATCTCGGATAGCCGCGGTCGAGAAGTTGCTATTTGTCCAAATGTTAGATC 1657
Query 1786 TTAGTCACAATGAGCTTCATTCAACTGAAGGATTAGAGGCAATGCAACTTCTCTCTTGCC 1845
| ||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| |||||
Sbjct 1658 TCAGTCACAATGAGCTTCATTCAGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCC 1717
Query 1846 TAAATCTGAGTCACAACAGAATCCGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGA 1905
||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||| | |
Sbjct 1718 TAAATCTGAGTCACAACAGAATCAGGAGCTTTTCAGCGCTTGACTCTTTAAGACATCTTA 1777
Query 1906 AGCAGCTGAAAGTGTTGGATGTTTCACACAACCACAT-TG-GCAAGCACTC--AGTGGAC 1961
||||||| | |||||||||||||||||| |||||||| || | | |||| ||| |||
Sbjct 1778 AGCAGCTTAGAGTGTTGGATGTTTCACATAACCACATCTGTGGG-GAACTCCCAGTAGAC 1836
Query 1962 ACAACACGGTACCTTTGTTCTTCACCGCTCTCTAATTCAGAGTGGAGTCAGGATGATGTA 2021
|||||| |||||||||||||||| |||||||||||||| | ||| | | | ||
Sbjct 1837 ACAACAAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGG-GTG-A---A--AC--TG-- 1885
Query 2022 GGAAGACAGAATCCTGGGTTGG-TCACCAAATACTGGGATGCGTATTTCGTCCTAAGAGA 2080
| |||| || || | | | | |||||| |||||||||||| || || |||||
Sbjct 1886 G-AAGA--GA-----GG-T-GCCTAAT-AAATACCAGGATGCGTATTTGGTGCTTAGAGA 1934
Query 2081 TTTGA--AT-CTGAAACAGTTAGATAT-AGCAGGAAATGA---AAT-TT--CAGG-GAAC 2129
||||| | ||||| ||||||||||| || ||| || || ||| || |||| |||
Sbjct 1935 TTTGATGAAACTGAAGCAGTTAGATATTAG-AGGCAACGACCTAATATTTGCAGGAGAA- 1992
Query 2130 GAATTCAGCTCTTTTGTCCTCCAGATTGTGCCAAAGCTTGTATGGCTCGATGGCCAGAAA 2189
|| |||||||| ||||||| |||| |||||||||||||||||||||| |||||||| |||
Sbjct 1993 GAGTTCAGCTCCTTTGTCCGCCAGGTTGTGCCAAAGCTTGTATGGCTTGATGGCCACAAA 2052
Query 2190 CT 2191
||
Sbjct 2053 CT 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115059649140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5