BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492397
Length=3389
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24480.1 | Symbols: | Protein kinase superfamily protein | ... 4617 0.0
> AT4G24480.1 | Symbols: | Protein kinase superfamily protein
| chr4:12649987-12654984 FORWARD LENGTH=3523
Length=3523
Score = 4617 bits (2500), Expect = 0.0
Identities = 3006/3237 (93%), Gaps = 88/3237 (3%)
Strand=Plus/Plus
Query 183 TTGATCGTCTGTTTTTGTTTATTTCTGTATTCAATGACGGGATTTGGTTAAACGAAGAAG 242
|||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 304 TTGATCGTTTGTTTTTGTTTGTATCTGGATTCAATGACGGGATTTGGTTAAACGAAGAAG 363
Query 243 ATTCATTTCTCTGTT-GttttttttGCCAAGGTTTTGATTTCATAGTGAGATTTTAACGA 301
||||||||||||||| ||| | || || ||||| ||||| ||||||||||||||||
Sbjct 364 ATTCATTTCTCTGTTCGTTCGATCTG-TAAATTTTTGCTTTCAGAGTGAGATTTTAACGA 422
Query 302 AATGCCTCACCGGACTACTTACTTCTTCCCGCGGCAGTTTCCTGATCGTGGATTCGATTC 361
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 423 AATGCCTCACCGGACTACTTACTTCTTTCCGCGGCAGTTTCCCGATCGTGGATTCGATTC 482
Query 362 ATTGTCGCTTAAGAATGATCACG---AGAAGATATCGTCTTCCAACGTTAGTGAGAATTT 418
|| ||||||||||||||||||| |||||| |||||| || |||||| | |||| |||
Sbjct 483 GTTTTCGCTTAAGAATGATCACGACAAGAAGAAATCGTCGTCTAACGTTGGAGAGAGTTT 542
Query 419 TGGATTTCAAAGAGAGAATAAATCTAATGGAGTCAGCGAAGATTCGAATAAGGACAAGGA 478
||||||||||||||| |||||||||||||||||| | |||||||| || ||||| |||||
Sbjct 543 TGGATTTCAAAGAGATAATAAATCTAATGGAGTCGGAGAAGATTCTAACAAGGAGAAGGA 602
Query 479 GACG-ACTGTGTTCTCCTCTAATTCTCTGCTTTCTAAAAGCTCCGCCGTTTCAGATCTCT 537
|| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 603 GA-GTACTGTGTTCTCCTCTAATCCTCTGCTTTCTAAAAGCTCAGCCGTTTCAGATCTCT 661
Query 538 TTAGCGGTGGTGTTGATGATCGCAAGTCGGAGAAGAAGCAGCAGCAGCAACTTGCGGCTT 597
||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 662 TTAGC---------GATGATCGCAAGTCGGAGAAGAAGCATCAGCAGCAACTAGCCGCTT 712
Query 598 TCTATGACTGGTTGGCGGAGAAGAAGGCTAATCTCTCTAGGTC-T--TCTACTACTACTA 654
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 713 TCTATGAGTGGTTGGCGGAGAAGAAGGCTAATCTCTCTAGGTCATCATCTACTACTACTA 772
Query 655 CTCATGGGCGCGCCGTGAAGCCCACGCGCTTCTCTATGTCGAGTGACGCCGATGAGGAGA 714
||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 773 CTCATGGACGCGGGGTGAAGCCCACGCGCTTCTCTATGTCTAGCGACGCCGATGAGGAGA 832
Query 715 GAGAGCATCTTTTGT-TGTCTCCGGCTGATCCGGCTCCGCTTCCTGCTACGTCTTCGCCG 773
|||||| ||| |||| | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 833 GAGAGCTTCTGTTGTCT-TCTCCGGCTGATCCCGCTCCGCTTCCTGCTACTTCTTCGCCG 891
Query 774 GATTCTGTCATCGCGGCGTCTTCTTCTTCGGCTCGAACGGTTAACATCA-ATGAACGAAA 832
||||| | | || | | ||||||| | ||||||||||| | ||||||||||
Sbjct 892 GATTC--T-A--------TCAT-TGATTCGGCTAGGACGGTTAACAT-ACATGAACGAAA 938
Query 833 CATTGATCGGAGCTTTGACAGGGAAGTTTCCCTTCCCCGAATGTCGAGTGAGAGCAGCTT 892
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 939 CATTGATCGGAGCTTTGACAGAGAGGTTTCGCTTCCCCGAATGTCGAGTGAGAGCAGCTT 998
Query 893 CGCTGGAAGTTTCTTCTCCGGGACGACGGTGGACGGGAATTTCTCCAATTTCTCAAGTCA 952
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CGCTGGAAGCTTCTTCTCCGGGACGACGGTGGACGGGAATTTCTCCAATTTCTCAAGTCA 1058
Query 953 TACGGACGCAAGGGAAACTTCGACCACCACGCGTGTCTCTGTCACCAAGGACGAAGAAGA 1012
||| |||||||||||||||||||||||||||| |||||| || | ||| || ||||||||
Sbjct 1059 TACAGACGCAAGGGAAACTTCGACCACCACGCTTGTCTCAGTGAACAAAGAGGAAGAAGA 1118
Query 1013 AGTTGAGGTTAGAGAAGAGGGCAAAGAGCAAAGCTTAGCGCAGAAATCAAAAGAAGGCTA 1072
|||||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1119 AGTTGAGGTTAGGGAACAGGGCAAAGAGCAAAGCTTAGCGCAGAAGTCAAGAGAAGGCTA 1178
Query 1073 TTACTTGCAAGTCACGCTTGCTAAGAGGCTAAGTTCTCAAGCAAACCTAGCATGTGACTC 1132
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1179 TTACTTGCAGGTCACGCTTGCTAAGTGGCTAAGTTCTCAAGCAAACCTAGCATGTGAGTC 1238
Query 1133 TGTTCATATACAGAGCACAGAAACTGTCTCCTACCGTTTTTGGGTAAGTGGTTGTTTATC 1192
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1239 TGTTCATATACAGAGCACAGAATCTATCTCCTACCGTTTTTGGGTAAGTGGTTGTTTATC 1298
Query 1193 ATACAGTGACAAGATATCAGATGGATTTTACAGTATACAAGGGATGGATCCGTATCTTTG 1252
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1299 ATACAGTGACAAGATATCAGATGGATTTTACAGTATATTAGGAATGGATCCGTATCTTTG 1358
Query 1253 GTTGATGTGTAACAATTCGGAGGAAGGAAAACGAATTCCTTCTCTTTTGTTACTAAAGGA 1312
|||||||||||||||||| ||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1359 GTTGATGTGTAACAATTCTGAGGATGGCAAACGAATTCCATCTCTTTTGTTACTCAAGGA 1418
Query 1313 AACTGAGCCGAATGATACATCAATGGAAGTGGTTTTGATAGACAGACGTGAGGACTCACG 1372
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1419 GACTGAGCCGAATGATACATCAATGGAAGTGGTTTTGATAGATAGACGTGAGGACTCACG 1478
Query 1373 TCTTAAAGAACTAGAGGACAAGGCACATGAGCTGTATTGTTCTTCAGACAACATGTTAGT 1432
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TCTTAAAGAACTGGAGGATAAGGCACATGAGCTGTATTGTTCTTCAGACAACATGTTAGT 1538
Query 1433 GCTCGTGGAGAAACTTGGCAGACTTGTTGCCGTTTATATgggggggAATTTCCAGGTGGA 1492
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1539 GCTCGTCGAGAAACTTGGCAGACTTGTTGCGGTCTATATGGGGGGGAATTTCCAGGTGGA 1598
Query 1493 GCAAGGTGATCTTCAGAAACGATGGAAACTGGTTAGCAATAGACTCAAGGAATTTCGGAA 1552
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1599 GCAAGGTGATCTCCAGAAACGATGGAAACTGGTCAGCAATAGACTCAAGGAATTTCGGAA 1658
Query 1553 ATGTATCATTCTTCCTATAGGTAGTCTAACAATGGGCCTTTGCCGGCATCGTGCCATCCT 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 ATGTATCATTCTTCCTATAGGTAGTCTAACAATGGGCCTTTGCCGGCATCGTGCCATCCT 1718
Query 1613 ATTTAAGAAATTGGCTGACTACATAGGTTTACCATGTCGGATAGCTCGAGGTTGCAGGTA 1672
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1719 ATTTAAGAAATTGGCTGATTACATAGGTTTACCATGTCGGATAGCTCGAGGTTGCAGATA 1778
Query 1673 CTGTAGAGAGAGCCACCAATCTTCTTGCCTTGTCAAGATTGACGATGACAGGAAGCTTTC 1732
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CTGTAAAGAGAGCCACCAATCTTCTTGCCTTGTCAAGATTGACGATGACAGGAAGCTTTC 1838
Query 1733 AAGGGAATATGTAGTTGACCTCATCGGGGAACCAGGAAATGTCCATGATCCGGATTCCTC 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AAGGGAATATGTAGTTGACCTCATCGGGGAACCAGGAAATGTCCATGATCCGGATTCCTC 1898
Query 1793 TATCAACGGTGAAACACAGTGTCAGATTCCTTCACCCCTTCAAATGAGTCATCTTACAGA 1852
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1899 TATCAACGGTGAAACACAGTGTCAGATTCCTTCACCTCTTCAAATGAGTCATCTTACAGA 1958
Query 1853 TTTTTCCAGGCCTTGCGTGCATAGTACATCTCCTTGTCATACTGTAGAGTCAAAGGCTTC 1912
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1959 TTTTTCCAGGCCTTGCGTGCATAGTACATCTCCTTGTCAGACTGTAGAGTCAAAGACTTC 2018
Query 1913 ACGCGCTCTTTCTGAAAACATTCAACGTTCAGGGAGGCAAGGCCATGTACACAAAGAATT 1972
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2019 ACGCACTCTTTCTGAAAACATTCAACGTTCAGGGAGTCAAGGCCAAGTACACAAAGAATT 2078
Query 1973 TGAGTTGCCTGATAATGCAGCGACAATGTGTTGTGCTAATGTTGATCAAACTTGCTGCGC 2032
||||||||||||||| |||| |||| | ||||||||| || |||||||||||||||| ||
Sbjct 2079 TGAGTTGCCTGATAACGCAGGGACAGTATGTTGTGCTCATATTGATCAAACTTGCTGTGC 2138
Query 2033 AAAAGCATCATCAATGGTTTTGCCAGAATCTGTTCTTCGAGCTCTACCACTTAATATACC 2092
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2139 AAAAGTATCATCAATGGTTTTGACAGAATCTGTTCTTCGAGCTCTACCACTTGATATACC 2198
Query 2093 AAACCTCAGTGAAGACAAGATT-CAACCACAAGAAACCTCCAAAGAAGAAACCGTTTTAT 2151
|||||| |||||||| |||||| | ||||||||||||| |||||||||||||||| |||
Sbjct 2199 AAACCTTAGTGAAGAAAAGATTGCC-CCACAAGAAACCTGCAAAGAAGAAACCGTTCTAT 2257
Query 2152 TAGAAGATCCAATTGAAAAAATAGCTATCAAGCAGCCAAACTTATCAGTTGAACCAGAGA 2211
|||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 2258 TAGAAGATCCAAC--A-------GCTATGAAGCAGCCAAACTTATCAGTTGAACCAGAGA 2308
Query 2212 TAGTAGAGGCTGACACTCGAAAAGATAAAAAAGGAAGGTTACCTGTTGACGCTGTCTCGC 2271
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2309 TAGTAGAGGCTGACACTCGAAAAGATAAAAAAGGAAGGTTACCTGTTGACGCCATCTCAC 2368
Query 2272 CTTACTTGACTATTGAGCCTTCTTTGGCATCAGATTGGCTGGAGGTCTCATGGAATGAAT 2331
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CTTACTTGACTATTGAACCTTCTTTGGCATCAGATTGGCTGGAGGTCTCATGGAATGAAT 2428
Query 2332 TGCATATCAAAGAGCGTGTGGGTGCTGGATCATTTGGAACTGTTCATCGTGCTGAGTGGC 2391
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 TACATATCAAAGAGCGTGTGGGTGCTGGATCATTTGGAACTGTTCATCGTGCTGAGTGGC 2488
Query 2392 ATGGATCAGATGTTGCTGTCAAGATTTTGTCTATTCAAGATTTCCATGATGACCAATTCA 2451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 ATGGATCAGATGTTGCTGTCAAGATTTTGTCTATTCAAGATTTCCATGATGACCAATTCA 2548
Query 2452 GAGAATTTCTCAGAGAGGT-TG----CAA----T----A-A-TGAAACGTGTTCGTCACC 2496
||||||||||||||||||| || ||| | | | ||||||||||||||||||
Sbjct 2549 GAGAATTTCTCAGAGAGGTATGTAAGCAAGCGGTTGCTATAATGAAACGTGTTCGTCACC 2608
Query 2497 CAAATGTTGTTCTCTTCATGGGTGCTGTGACAGAGCGACCCCGGTTATCAATAATAACAG 2556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2609 CAAATGTTGTTCTCTTCATGGGTGCTGTGACAGAGCGACCCCGGTTATCAATAATAACAG 2668
Query 2557 AATATTTGCCTAGGGGCAGTCTATTTCGCCTTATCCATAGGCCAGCTTCTGGGGAGTTGC 2616
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2669 AATATTTGCCAAGAGGCAGTCTTTTTCGCCTTATCCATAGGCCAGCTTCTGGGGAGTTGC 2728
Query 2617 TAGATCAGAGGAGGAGGCTACGTATGGCATTGGATGTGGTTTGTGGTCTTTCCCATTATG 2676
||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 2729 TAGATCAGAGGAGGAGGCTACGTATGGCATTGGATGTGG--------C---C--A--A-G 2772
Query 2677 CCAAGGGGCTCAACTACCTACACTGTCTTAATCCTCCTGTAGTGCATTGGGACCTGAAAT 2736
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2773 ----GGG-CTCAACTACCTACACTGTCTTAATCCTCCTGTAGTGCATTGGGACCTGAAAT 2827
Query 2737 CTCCAAATCTACTGGTTGATAAGAACTGGACAGTGAAGGTTTGCGATTTTGGACTTTCAA 2796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2828 CTCCAAATCTACTGGTTGATAAGAACTGGACAGTGAAGGTTTGCGATTTTGGACTTTCAA 2887
Query 2797 GATTCAAGGCAAACACTTTCATACCATCAAAATCAGTTGCAGGAACACCTGAGTGGATGG 2856
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2888 GATTCAAGGCAAACACTTTCATACCATCAAAATCTGTTGCAGGAACACCTGAGTGGATGG 2947
Query 2857 CTCCAGAGTTTCTTAGAGGGGAGCCAACAAACGAGAAATCAGATGTTTACAGTTTTGGAG 2916
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 2948 CTCCAGAGTTTCTTAGAGGGGAACCGACAAACGAGAAATCAGATGTTTACAGTTTCGGAG 3007
Query 2917 TAGTTCT-ATGGGAGTTGATTACTTTGCAACAGCCTTGGAATGGACTCAGTCCTGCTCAG 2975
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3008 TAGT-CTTATGGGAGTTGATTACTTTGCAACAGCCTTGGAATGGACTCAGTCCTGCTCAG 3066
Query 2976 GTGGTTGGAGCAGTTGCATTCCAAAACAGGCGGCTTATAATTCCTCCCAATACCTCTCCG 3035
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 3067 GTGGTTGGAGCAGTTGCATTCCAGAACAGGCGGCTTATAATTCCTCCCAACACCTCTCCG 3126
Query 3036 GTTTTGGTATCTCTAATGGAAGCTTGCTGGGCAGATGAGCCGGCTCAGCGGCCAGCATTT 3095
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3127 GTTTTGGTATCTCTAATGGAAGCTTGCTGGGCAGATGAGCCGTCTCAGCGGCCAGCATTT 3186
Query 3096 AGCGGCATAGTGAACACATTGAAGAAGCTACTAAAGTCTCCAGTGCAGCTGATCCAAATG 3155
| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3187 GGTAGTATAGTGGACACATTGAAGAAGCTACTAAAGTCTCCGGTGCAGCTGATCCAAATG 3246
Query 3156 GGCGGAGACAAAGGGGTAATTCCAACTAAATGAGCTCCCATTCTATAGT-TAAAATACTT 3214
|| |||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||
Sbjct 3247 GGTGGAGACAAAGGGGTAATTCCAACTAAATCAGCTCCCATACTATAGTATAAA-TACTT 3305
Query 3215 AACTTTTACGGTACTAACAGAAACACTGTAGGTGCTTTGCGTTGATTAGCTCCTGAATTT 3274
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3306 AACTTTTACGGTGCTAACAGAAACACTGTAGGTGCTTTGCGTTGATTAGCTCCTGAATTC 3365
Query 3275 GATTTTAAATTAGAAAAATCAATGAGACGAGAG--GCCTTGCCTGGAAGAATGGAAGGCt 3332
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 3366 GATTTTAAATTAGAAAAATCAATGAGACGAGAGAAGCCTTACCTGGAAGAATGGAAGGCT 3425
Query 3333 ttttttttttttttttggtttttgtttgtatagtatagtttttATATGCTCTTACTT 3389
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3426 TTTTTATTTTTATTTTGGTTTTTGTTTGTATAGTATAGGTTTTATATGCTGTTACTT 3482
Score = 141 bits (76), Expect = 4e-32
Identities = 93/101 (92%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 69 AAACCACCG-TAGTTTTTGTTTTCCGGTGATACGTTTAGATTATCTTCTTCTTTTCTCCG 127
||||||||| |||||||| ||| ||||||||||||||||| || |||||| |||| ||||
Sbjct 117 AAACCACCGTTAGTTTTTCTTTCCCGGTGATACGTTTAGA-TAGCTTCTTTTTTTTTCCG 175
Query 128 GTGGTTTACGTTGACGATTGACTACTTCAATTCTAAACGGA 168
|||||| ||||||||||||||||||||||||||||||||||
Sbjct 176 GTGGTTAACGTTGACGATTGACTACTTCAATTCTAAACGGA 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168661262366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5