BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492399
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 1604 0.0
> AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein
with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305
Length=1305
Score = 1604 bits (868), Expect = 0.0
Identities = 1029/1100 (94%), Gaps = 37/1100 (3%)
Strand=Plus/Plus
Query 115 TTTCCGATGTTTGGTCGCCATTCTCAATCGGTGATTATCCCCAATAACCAGATTGGTACC 174
|||||||||||||||||||| | || ||||||||| ||||||||||||||||||
Sbjct 216 TTTCCGATGTTTGGTCGCCA---T---TC---GATTATCCCAAATAACCAGATTGGTACC 266
Query 175 GCCTCTGCTTCCGCTGGTGAAGACCATGTCTCTGCCTCCGCAACGTCTGGTCACATTCCT 234
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 267 GCCTCTGCTTCCGCTGGTGAAGACCATGTCTCTGCCTCCGCTACGTCTGGTCACATTCCT 326
Query 235 TACGACGATATGGACGAAATCCCTCATCCTGACTCCATTTATGGTGCTGCCTCCGATTTG 294
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 327 TACGACGATATGGAAGAAATCCCTCATCCTGACTCTATCTATGGTGCTGCCTCCGATTTG 386
Query 295 ATTCCCGATGGCTCTCAATTGGTTGCTCACCGATCCGATGGCTCTGAATTACTAGTTTCT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 387 ATTCCCGATGGCTCTCAATTGGTTGCTCACCGATCCGATGGCTCTGAATTACTTGTTTCT 446
Query 355 CGGCCACCGGAAGGGGCTAATCAGCTCACGATCTCGTTCCGTGGACAAGTTTACGTTTTT 414
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 447 CGGCCACCGGAAGGGGCGAATCAGCTTACGATCTCGTTCCGTGGACAAGTTTACGTTTTT 506
Query 415 GATGCTGTTGGTCCTGACAAGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAG 474
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 507 GATGCCGTTGGTGCTGACAAGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAG 566
Query 475 CTTGCTCCTGGTCCGCAGGTGATGGAACTAGCT---CAGCAGAATCATATGCCTGTTGTA 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 567 CTTGCTCCTGGTCCGCAGGTGATGGAACTAGCTCAACAGCAGAATCATATGCCTGTTGTA 626
Query 532 GAATACCAGAACCGCTGTAACCTTCCGCAACGGGCACAATCCTTGGATAGGTTTCGGAAG 591
||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GAATATCAGAGCCGCTGTAGCCTTCCGCAACGGGCACAATCCTTGGATAGGTTTCGGAAG 686
Query 592 AAGAGGAATTCTAGATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTGGCC 651
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 687 AAGAGGAATGCTAGATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCC 746
Query 652 TTAAGAATGGCACGTAATAAAGGTCAATTCACGTCTTCAAAGATGACAGATGGGGCTTAT 711
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 747 TTAAGAATGGCACGTAATAAAGGTCAATTCACCTCTTCAAAGATGACAGATGGGGCTTAT 806
Query 712 AACTCGGGCACAGATCAAGATTCTGCCCAAGATGATGGCCATCCAGAAATATCGTGTACT 771
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 807 AACTCTGGCACAGATCAAGATTCTGCCCAAGATGATGCCCATCCAGAAATATCGTGTACT 866
Query 772 CATTGTGGCATTAGTTCCAAATGTACACCAATGATGCGACGTGGCCCTTCCGGCCCCAGG 831
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CATTGCGGCATTAGTTCCAAATGTACACCAATGATGCGACGTGGCCCTTCCGGCCCCAGG 926
Query 832 ACTCTCTGCAATGCCTGTGGACTTTTTTGGGCTAACAGGGGTACATTGAGGGATCTCTCA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 ACTCTCTGCAATGCCTGTGGACTTTTTTGGGCTAACAGGGGTACATTGAGGGATCTCTCA 986
Query 892 AAGAAAACAGAAGAGAATCAGTTGGCTTTAATAAAACCG-T---CTG--AT--------- 936
|||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 987 AAGAAAACAGAAGAGAATCAGTTGGCTTTAATGAAACCGGTAAGCTCTTATAAATATCAC 1046
Query 937 ---G--G-TG-TG--AGTGTTGCTGATGCTGCTAACAACTTAAACTCTGAAGCTGCAACT 987
| | || || |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1047 CCTGATGATGGTGGGAGTGTTGCTGATGCTGCTAACAACTTAAACACTGAAGCTGCAAGT 1106
Query 988 GTTAAAGAACACACTTCCATGGTTTCTCTTGCCAATGGGGACAATTCTCATCTCTTAGGT 1047
||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 1107 GTTGAAGAACACACTTCCATGGTTTCTCTTGCCAATGGGGATAATTCTAATCTGTTAGGT 1166
Query 1048 GATCACTAAATACTGTGATAAGATTCAGAAGATAGAAAATCCTTGTAGAATCAGTTGGTC 1107
||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct 1167 GATCACTAAATACTGTGATAAGAATCAGAAGATAGAAA-TCTTTGTAGAATCAGATGGTC 1225
Query 1108 ATCTCTATGAACTTATCTTTTCACCATCACATGTATTATAGAAACCATAACCGAACCTCA 1167
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1226 TTCTCTATGAATTTATCTTTTCACCATCACATGTATTATAGAAACCGTAACCGAACCTCA 1285
Query 1168 AATCAAATACCATATCAGAT 1187
||||||||||||||||||||
Sbjct 1286 AATCAAATACCATATCAGAT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5