BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492411
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24370.1 | Symbols: | unknown protein; Has 30201 Blast hits... 728 0.0
> AT4G24370.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12611396-12612131
REVERSE LENGTH=736
Length=736
Score = 728 bits (394), Expect = 0.0
Identities = 486/530 (92%), Gaps = 8/530 (2%)
Strand=Plus/Plus
Query 1 TTTGCGATCAACAGTTTTGCTGAGAGATGAGGAAAGGAGGCAAGGAAGAAGACGAAGTTG 60
|||| ||||||||| || | |||||||||||| ||||||||||||||||||||||||||
Sbjct 7 TTTGAGATCAACAG-ATT-C-GAGAGATGAGGAGAGGAGGCAAGGAAGAAGACGAAGTTG 63
Query 61 AACAATTGCTTCAAGCGGCTCAAGATGAGATGATACTCAAGCTCTCTGTAGATTCTCACA 120
|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 64 AACAGTTGCTTCAAGCAGCTCAAGATGAGATGATACTAAAGCTCTCTGTTGATTCTCACA 123
Query 121 CTTCTCGATCCTCTTCCGATTACTTAGATCCAGATCTCCACTCTAGATTTCTCGCTCTCA 180
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 124 CTTCTCGATCTTCTTCCGATTACTTAGATCCAGATCTTCACTCTAGATTTCTCGCTCTCA 183
Query 181 AATCTCAAAAGAAGAAGGATCTGCAGCAACAACAACATAAACGACGGCCGAGATCTCC-G 239
||||||||||||||||||||| |||||||||||| | || | |||||||||| | | |
Sbjct 184 AATCTCAAAAGAAGAAGGATCAGCAGCAACAACAG-A-AA-CAACGGCCGAGAA-TGCAG 239
Query 240 ACGAAATCAAAGGATGTGGTTGAAGAAACGCCAGACGATCTCATGCTCCGATTCGCGGCT 299
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 240 CCGAAATCAAAGGATGTGGTTGAAGAAACACCAGAAGATCTCATGCTTAGATTCGCGGCT 299
Query 300 CTGAAGACTTCTCTCCCTTCTGCGTCTTCTTCGTCCTCTGTACTTCTTCAGGATGAAATC 359
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 300 CTGAAAACTTCTCTCCCCTCCGCGTCTTCTTCGTCCTCTGTTCTTCTTCAGGATGAAATC 359
Query 360 GGAGAAGATGGTGATGAAATCGGAGAAGATGCTGAAGTGGAGAAGCTGATTCAATGGGCT 419
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 360 GGAGAAGATGGTGATGAAATCGGAGAAGATGCTGAAGTGGATAAGCTGATCCAATGGGCT 419
Query 420 ATAGACGCCGCCCGTCTTGATCCTTCTCCGCCTTCAGACGATGATCAAAGCCAGAGTTCC 479
|||||||| |||||||| ||||| |||||| |||| |||||||| |||||||||| || |
Sbjct 420 ATAGACGCAGCCCGTCTCGATCCGTCTCCGTCTTCTGACGATGAGCAAAGCCAGAATTGC 479
Query 480 GATAGCGATGATGAGAATAATTCAACGAAAGATGTTAAACCTTAATTTTA 529
|||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 480 GATAGCGATGATGAGAATGATTCAACTAGAGATGTTAAACCTTAATTTTA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5