BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492412
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24350.1 | Symbols: | Phosphorylase superfamily protein | c... 1694 0.0
AT4G24340.1 | Symbols: | Phosphorylase superfamily protein | c... 1312 0.0
> AT4G24350.1 | Symbols: | Phosphorylase superfamily protein |
chr4:12609528-12611468 FORWARD LENGTH=1260
Length=1260
Score = 1694 bits (917), Expect = 0.0
Identities = 1119/1214 (92%), Gaps = 23/1214 (2%)
Strand=Plus/Plus
Query 4 ACGAGAATCACGTGGAAAGAAGAAACTTGATAGTAGTTTGAATTGGATG------ATATA 57
||||||| |||||||||||||||||| | || |||| || ||||||| |||||
Sbjct 10 ACGAGAAGCACGTGGAAAGAAGAAAC-T-AT-CAAGTTGGACTTGGATGATATATATATA 66
Query 58 TATGCAGCTGTGGATTTAAATC-TCCAACCAACCAATCAGATGGCTTCCCTGTACCACAA 116
||||||||||||||||| |||| | |||||||||| || || | || ||||||
Sbjct 67 TATGCAGCTGTGGATTTGAATCGT-AAACCAACCAACCA-AT--C--AGATGGACCACAC 120
Query 117 TCTTTATCTTCTTCC-TCTGCTCTTCTTCATCATCATCTCTTCCTTCCACGTTTTGCCTG 175
||||| ||||||||| | | |||||| |||| ||||| ||||||||||| ||||||||||
Sbjct 121 TCTTTCTCTTCTTCCAT-TTCTCTTCATCATAATCATTTCTTCCTTCCATGTTTTGCCTG 179
Query 176 TTTCACCCACACCTTCACACAAACTAAAATCCGCTATTACCATTC-GAAAACTCAACCTC 234
|||||||||||||||||||||||||||||||||| | ||||| || |||||||||||| |
Sbjct 180 TTTCACCCACACCTTCACACAAACTAAAATCCGCCACTACCA-TCAGAAAACTCAACCGC 238
Query 235 AGAGGACCGTACATCGGCCTCGTGACGGTCATTGAGACCGAAGAAAATGCTTTTCTCCGC 294
||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 GGAGGACCTTACATCGGTCTCGTGACGGTCATTGCGACCGAAGAAAATGCTTTTCTCCGC 298
Query 295 AGTGTCGAATTCAGACCCGACCCTACTCATCCCTTCTTGGATCTCTCTGGAAGACGTTTT 354
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 AGTGTCGATTTCAGACCTGACCCTACTCATCCCTTCTTGGATCTCTCTGGGAGACGTTTT 358
Query 355 CGAATAGGGAAGGTTCATGGAAAGAAGGTTGTGTATGTCAGATGTGGGAGAGGAATGGTG 414
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 CGAATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTTAGATGTGGGAGAGGAATGGTG 418
Query 415 AACGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGTGCAT 474
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AATGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGTGCAT 478
Query 475 TTTGGGATTGCAGGAAATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCCTAAG 534
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTGGGATTGCTGGAAATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCCTAAG 538
Query 535 CAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGAAAAAGCAAAGGGAGGTGAG 594
||||| |||||||||||||| |||||||||||||||||||| |||| |||||||| ||||
Sbjct 539 CAAATTACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGACAAAGTAAAGGGAGTTGAG 598
Query 595 GATTTAGCGTACTTAGAGGTCGGGAACTATAATGTTCCAAAAGGAGATGGCAACAATGAG 654
||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 599 GATATAGCGTACTTAGATGTCGGAAACTATAATGTTCCAAAAGGAGATGGCGACAATGAG 658
Query 655 TTAGGGAGTATTGGATACAGTTACGAGCAACTATATTCAGTCACTGGTCGCATCAATATA 714
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |
Sbjct 659 TTAGGGAGTATTGGATATAATTACGAGCAACTATATTCAGTCACTGGTCACATCAATGCA 718
Query 715 CCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGAGCTA 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 CCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGATCTA 778
Query 775 GAGAAGATGGAGCTGTCGCAGTGTGTGAATGCAAGTTTGTGTCTTCCAAAGAAACCGAAA 834
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 779 GAGAAGATGGAGCTATCGCAGTGTGTAAATGCAAGTTTGTGTCTTCCAAAGAAACCAAAA 838
Query 835 TTGGTTGTTGGACTGAAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTACAGA 894
||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 839 TTGGTAGTTGGATTGAAAGCAGCCACTGCTTACATATTTGTGGATAATGCAGCCTATAGA 898
Query 895 AATTTCTTATACGATACTTTTGGCGTTTCCTCCTCAGATATGGAGAGTTCTGCAGTAGCC 954
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 899 AATTTCTTATACGATACTTTTGGAGTCTCCTCCTCTGATATGGAGAGTTCTGCAGTAGCC 958
Query 955 ATGACGTGCGCATCAAATGGTTATCCCG-TAATTGTGATAAGAGGATTATCAGATTTAGC 1013
||||| |||||||||||||| ||||| | ||||||||||||| || ||||||||||||||
Sbjct 959 ATGACATGCGCATCAAATGGGTATCC-GATAATTGTGATAAGGGGTTTATCAGATTTAGC 1017
Query 1014 TGGAGTAGGAGGAGATAACACTGTTCATAAGTTTGGATCTTTGGCTGCCACTAACACTGC 1073
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGGAGAAGGAGGAGATAACACTGTTCATAAGTTTGGATCTTTGGCTGCCACTAACACTGC 1077
Query 1074 TAAAGCTGTTTTGGAGTTCATTAAGAAGCTTGCACCGTCCTAATTCCTA-AGTGTAACCT 1132
||||||||||| |||||||||| |||||| |||||| ||||||||| ||||||||||
Sbjct 1078 CAAAGCTGTTTTAGAGTTCATTAGGAAGCTCCCACCGTACTAATTCCTCTAGTGTAACCT 1137
Query 1133 ATTTATCATGAATGTTTGAACCTAGTTCTCTAGTTCATATCAACGAACCCGTGGCAACAA 1192
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 ATTTATCATGAATGTTTGAATCTAGTTCTCTAGTTCATATCAACGAACCCGTGACAACAA 1197
Query 1193 ATGATTTGGATTGT 1206
||||||||||||||
Sbjct 1198 ATGATTTGGATTGT 1211
> AT4G24340.1 | Symbols: | Phosphorylase superfamily protein |
chr4:12607447-12609252 FORWARD LENGTH=1149
Length=1149
Score = 1312 bits (710), Expect = 0.0
Identities = 964/1084 (89%), Gaps = 28/1084 (3%)
Strand=Plus/Plus
Query 81 CCAACCAACCA-ATCAGATGGCTTCCCTGTACCACAATC-TTTATCTTCTTCCTCTGCTC 138
|||||||| | |||||||||||||| || | ||||||| ||| |||| ||||||| |||
Sbjct 13 CCAACCAA-TATATCAGATGGCTTCCATGGATCACAATCATTT-TCTTTTTCCTCTCCTC 70
Query 139 TTCTTCATCATCATCTCTTCCTTCCACGTTTTGCCTGTTTC-ACCCACACC-T-----TC 191
||| ||||||||||||||||||| |||||||||| || ||| | ||||||| | ||
Sbjct 71 TTCATCATCATCATCTCTTCCTTGCACGTTTTGCGTGCTTCGA-CCACACCTTCACACTC 129
Query 192 ACACAAACTAAAATCCGCTATTACCATTCGAAAACTCAACC-TCAGAGGACCGTACATCG 250
|||||||||||||||||| | ||||||| ||||| |||||| | |||||||| ||||| |
Sbjct 130 ACACAAACTAAAATCCGCCACTACCATTAGAAAAATCAACCGT-AGAGGACCTTACATTG 188
Query 251 GCCTCGTGACGGTCATTGAGACCGAAGAAAATGCTTTTCTCCGCAGTGTCGAATTCAGAC 310
|||| ||||||||| |||||||||||||| ||||||||||| ||||||| || |||||||
Sbjct 189 GCCTTGTGACGGTCTTTGAGACCGAAGAAGATGCTTTTCTCGGCAGTGTTGATTTCAGAC 248
Query 311 CCGACCCTACTCATCCCTTCTTGGATCTCTCTGGAAGACGTTTTCGAATAGGGAAGGTTC 370
||| ||||| ||||| ||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 249 TCGATCCTACGCATCCTTTCCTCGATCTCTCTGGAAGACGTTTTCGTATAGGGAAGATTC 308
Query 371 ATGGAAAGAAGGTTGTGTATGTCAGATGTGGGAGAGGAATGGTGAACGGAGCAGCAGCAA 430
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 309 ATGGAAAGAAGGTTGTGTATGTCAGATGTGGGATAGGAATGGTGAACGCAGCAGCAGCAA 368
Query 431 CACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGTGCATTTTGGGATTGCAGGAA 490
||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 369 CACAACAAATGATAGATGTGTTCAGTGTGAAAGGGATTGTGCATTTTGGGATTGCTGGAA 428
Query 491 ATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATCACGAATGCTG 550
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATATAAACAACTCGATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATCACGAATGCTG 488
Query 551 GCTTATGGGATTGGCTGAATCCAGAAAAAGCAAAGGGAGGTGAGGATTTAGCGTACTTAG 610
|||| ||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 489 GCTTGTGGGATTGGCTGAATCCAGGCAAAGCAAAAGGAAATGAGGATGTAGCGTACTTAG 548
Query 611 AGGTCGGGAACTATAATGTTCCAAAAGGAGATGGCAACAATGAGTTAGGGAGTATTGGAT 670
| ||||||||||||||||||||| ||||| | | |||| ||||||| | ||||||||
Sbjct 549 ATGTCGGGAACTATAATGTTCCACAAGGA-A----A-CAATAAGTTAGGAACTATTGGAT 602
Query 671 ACAGTTACGAGCAACTATATTCAGTCACTGGTCGCATCAATAT-ACCTCAGAATGTGTTT 729
||||||||||| || |||||||||||| ||||| ||||||| | ||| |||| ||||||
Sbjct 603 ACAGTTACGAGGAATTATATTCAGTCAGTGGTCACATCAAT-TCACCAAAGAAAGTGTTT 661
Query 730 TGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGAGCTAGAGAAGATGGAGCTG 789
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 662 TGGATTAATACAACTCAAGAGTGGCTTCATCTTGCAGCTGATCTTGAGAAGATGGAGCTA 721
Query 790 TCGCAGTGTGTGAATGCAAGTTTGTGTCTTCCAAAGAAACCGAAATTGGTTGTTGGACTG 849
| ||||||||||||||||||| ||||||||||||| ||||| ||| | || |||||| |
Sbjct 722 TTGCAGTGTGTGAATGCAAGTCTGTGTCTTCCAAATAAACCCAAAGTAGTAGTTGGATTA 781
Query 850 AAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTACAGAAATTTCTTATACGAT 909
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 AAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTATAGAAATTTCTTATACGAT 841
Query 910 ACTTTTGGCGTTTCCTCCTCAGATATGGAGAGTTCTGCAGTAGCCATGACGTGCGCATCA 969
|||||||| |||||||||||||| |||||||||||||| || |||||||| |||| |||
Sbjct 842 ACTTTTGGAGTTTCCTCCTCAGACATGGAGAGTTCTGCTGTGGCCATGACTTGCGTGTCA 901
Query 970 AATGGTTATCCCGTAATTGTGATAAGAGGATTATCAGATTTAGCTGGAGTAGGAGGAGAT 1029
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 902 AATGGGTATCCCCTAATTGTGATAAGAGGATTATCAGATTTAGCAGGAGTAGGAG-A--T 958
Query 1030 AACACTGTTC-ATAAGTTTGGATCTTTGGCTGCCACTAACACTGCTAAAGCTGTTTTGGA 1088
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 959 AACACTGTTCGA-AAGTTTGGATCTTTGGCTGCCACTAACACTGCCAAAGCTGTTTTAGA 1017
Query 1089 GTTCATTAAGAAGCTTGCACCGTCCTAATTCCTAAGTGTAACCTATTTATCATGAATGTT 1148
||||||||| ||||| ||||||| ||||||||| ||||||||||| || ||| |||||
Sbjct 1018 GTTCATTAAAAAGCTCCCACCGTCATAATTCCTACGTGTAACCTATC-ATTATGGATGTT 1076
Query 1149 TGAA 1152
||||
Sbjct 1077 TGAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5