BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492418
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24320.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1358 0.0
> AT4G24320.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr4:12602298-12603485 REVERSE LENGTH=1188
Length=1188
Score = 1358 bits (735), Expect = 0.0
Identities = 829/875 (95%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCTGCAACCACAAAGCTGGGGAGAGCTCTGCAACAAAGACGCACCTTCGTAAAC 60
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCTGCAACAACAAAGCTAGCGAGAGCTCTGCAACAAAGACGCACCTTCGTAAAC 60
Query 61 GCCAGAGTCAAATGGGTCAGTGACTACTACCTCGACGAAGCTGTTCAACGAGAGAAAAAC 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 GCCAGAGTCAAATGGGTCAGTGACCATTACCTCGACGAAGCTGTTCAACGAGAGAAAAAC 120
Query 121 CTCAAGCAAGTTATCTCTCTCAAGGATCGAATGGTAtcttctccgtcgaaatctctccct 180
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 121 CTAAAGCAAGTTATCTCTCTCAAGGATCGAATCGTATCATCTCCGTCGAAATCACTCCCT 180
Query 181 ctctcttccctttcactcctcaagcctctcgtcaatctccACATAACCGCCGCCGCGTTT 240
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 CTCTCTTCTCTTTCACTTCTCAAACCTCTCGTCAATCTTCACATAACCGCCGCCGCGTTT 240
Query 241 TTCCAGAAATACCCTTCTGTCTTCACCACTTTTCAGCCCTCTCGTTCTCTTCCTCTCCAC 300
|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 241 TTCCAGAAATACCCTTCTGTCTTCACCACTTTTCAGCCTTCTCCTTCTCATCCTCTCCAT 300
Query 301 GTTCGTCTCACTCCCCAAGCTCT-AGCCCTCCACAAAGAAGAAGAGACGATCCA-CATCT 358
||||||||||||||||||||||| | | ||||||||||||||||||||||| || | |||
Sbjct 301 GTTCGTCTCACTCCCCAAGCTCTCA-CTCTCCACAAAGAAGAAGAGACGATTCATC-TCT 358
Query 359 CGCCGCCTCACCGCAACGTCACCGTTAAACGGTTGACCAAATTCTTGATGCTAACGGGAG 418
|||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 359 CGCCGCCTCAACGCAACGTCACTGTTCAACGGTTGACTAAATTCTTGATGCTAACGGGAG 418
Query 419 CTGGAAGTCTTCCTCTCTATATCGTCGATCGTTTCAGGTTCGATTTGGGTCTCCCTCACG 478
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 419 CTGGAAGTCTTCCTCTCTATGTCCTCGATCGTTTCAGGTTCGATTTGGGTCTCCCTCGCG 478
Query 479 ATTACATTACTTCGCTGATCGGAGATTACCCGGATTACTTTGAAGTAACTGAGATCAAAG 538
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 479 ATTACATTACTTCGTTGATCGGCGATTACCCGGAATACTTTGAAGTAACTGAGATCAAAG 538
Query 539 ATAGGTTAACGGGTGAAAAGACGCTTGCTTTGACAATTTCTTCGCGGCGGAACAACCTCC 598
|| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 ATCGGTTAACGGGTGAAAAGACGCTTGCTTTGACGATATCTTCGCGGCGGAACAACCTTC 598
Query 599 CTGTGTCGGAAATGGAGAGAAGAGAAGCCACCATTGATGGGTTTCGTGTGAAAAAAGGGT 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 CTGTGTCGGAAATGGAGAGAAGAGAAGCCACCATTGATGGGTCTCGTGTGAAAAAAGGGT 658
Query 659 TGCGCATAAGGTATTCGATGAATTTCCCCAAAGGGTACGAGTTGGATAAAAGGGTGAAGA 718
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 659 TGCGCATAAGGTATTCGATGAATTTCCCCAAAGGGTACGAATTGCATAAAAGGGTGAAGA 718
Query 719 ATTGGGTGGAGCAATGGCAAAATCTCCCATACATTTCGCCTTACGAAAATGCCTTTCACT 778
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 719 ATTGGGTGGAGCAATGGCAAAATCTCCCATACATTTCGCCTTATGAAAATGCTTTTCACT 778
Query 779 TGGGGTCGTACAGTGATCAGGCTGAGAAGTGGGCGGTCGCAGTACTTCATGAGCTTTTGT 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TGGGGTCGTACAGTGATCAGGCTGAGAAGTGGGCTGTCGCAGTACTTCATGAGCTTTTGT 838
Query 839 GCCTCTTAGTATCGAAGAAGACTGAGACAGACAAT 873
||| |||||||| |||||||||||||||||||||
Sbjct 839 TCCTTTTAGTATCTAAGAAGACTGAGACAGACAAT 873
Score = 353 bits (191), Expect = 2e-96
Identities = 226/242 (93%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 870 CAATAATGCTTTGGTGCACCACCCGGGTATATTTTACATGTCGCACAAGATTCGGACCCA 929
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CAAGAAGGCTTTGGTGCACCACCCGGGTATATTTTACATGTCGCACAAGATTCGGACCCA 974
Query 930 GACTGTTGTTCTAAGGGAAGCTTACCACAAAGTTTTCTTGCTGGAGAAGCATCCATTGAT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GACTGTTGTTCTAAGGGAAGCTTACCACAAAGTTTTCTTGCTGGAGAAGCATCCATTGAT 1034
Query 990 GGGGATGAGGCATCAGTACATTTATCTTATGAGCAAATCGGGGAGAGGAAAGAAACGCGA 1049
|||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1035 GGGGATCAGACATCAGTACATTTATCTTATGAGCAAATCAGGGAGAGGGAAGAAACGAGA 1094
Query 1050 CTCTGTTCATGGAATTGAGAGAAGGAAGCAACC-AAAAAAGGAGAGCAATCAAAGCTTGT 1108
|| |||||||||| |||||||||| ||||| ||||||| |||| |||||||||||||
Sbjct 1095 CTATGTTCATGGAGTTGAGAGAAG----CAACCGAAAAAAG-AGAGTAATCAAAGCTTGT 1149
Query 1109 GA 1110
||
Sbjct 1150 GA 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5