BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492419
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24310.1 | Symbols: | Protein of unknown function (DUF679) ... 992 0.0
> AT4G24310.1 | Symbols: | Protein of unknown function (DUF679)
| chr4:12600893-12601675 FORWARD LENGTH=783
Length=783
Score = 992 bits (537), Expect = 0.0
Identities = 619/659 (94%), Gaps = 4/659 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCATCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 ATGTCTTCACCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 67
Query 61 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCCGCCATGTCACAGACGCTAACC 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 68 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCAGTCATGTCACAGACGCTAACC 127
Query 121 TCAGCTGCAAACTTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCAGCTGCAAACCTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 187
Query 181 ATACCCGTCTTTACATCCAATGGTTCATGCGATTATCCGACCC-GTGTTTTAACCGCTGG 239
||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | |
Sbjct 188 ATACCCGTCTTTACATCCAATGGTTCATGCGATTACCCGACCCAG-GTTTTAACCA-TAG 245
Query 240 -GCTCCTAACGCTTCTCTCCATCTCCTGCTTCCTCAGCTCCTTCACAGACAGCGTCAAGG 298
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 246 TGCTCCTCACGCTTCTCTCCATCTCCTGCTTCCTTAGCTCCTTCACTGACAGCGTCAAGG 305
Query 299 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGATTTTCGACT 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 306 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGGTTTTCGACT 365
Query 359 ACCCTGACCCTGATGGTTTGGGTTTACCCGATCTTAGTAAATACCGCATAAGGATTATCG 418
||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| |
Sbjct 366 ACCCTGACCCTGACGGTTTGGGTTTACCCAATCTTAGTAAATACCGGATAAGAATTATTG 425
Query 419 ACTGGATCCACGCCGTTTTGTCTGTTCTTGTGTTCGGTGCGGTGGCTCTGAGGGACAAGA 478
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 426 ACTGGATCCACGCCGTTTTGTCGGTTCTTGTGTTTGGTGCGGTGGCTCTGAGGGACAAGA 485
Query 479 ACGCCGTGAGCTGTTTTTATCCAGCTCCGGAGCAAGAAACCAAGAAGGTTTTGGATATTG 538
|||||||||| ||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 486 ACGCCGTGAGTTGTTTTTATCCGGCGCCAGAGCAAGAAACCAAGAAGGTTTTGGACATTG 545
Query 539 TTCCGATGGGTGTTGGGGTTATTTGCGGCTTGTTGTTTTTGGTTTTCCCGGCCAGAAGAC 598
|||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||| |
Sbjct 546 TTCCAATGGGTGTTGGGGTTATCTGTGGCATGTTGTTCTTGGTTTTTCCGGCGAGAAGGC 605
Query 599 ACGGTATCGGATATCCGGTTACCGGAGACGGAGGCCGCCGTTAGATTTGTTATTTATTT 657
||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 606 ACGGTATTGGATATCCGGTCACCGGAGACGGGGGTCGTCGTTAGATTTGTTATTTATTT 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5