BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492420

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28550.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   699    0.0  


> AT5G28550.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: homolog of separase (TAIR:AT4G22970.2); Has 25 Blast 
hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:10557722-10559779 
REVERSE LENGTH=861
Length=861

 Score =  699 bits (378),  Expect = 0.0
 Identities = 482/530 (91%), Gaps = 15/530 (3%)
 Strand=Plus/Plus

Query  209  AGATCACTAACCGTCTAGTTGAGGATGTAATTGCTAGTCCGTGGATTTCACCTCCAGAGC  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  335  AGATCACTAACCGTCTAGTTGAGGATGTAATTGCTAGTCCGTGGATTTCACCTCCAGAGC  394

Query  269  TCAAATATCTATCTGCTTCATTTCACGATATCGGTGTAGATTTCTACAAGATTAAGCACC  328
            |||||| | ||| ||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct  395  TCAAATTTTTATTTGCTTCATTTCACGATATCAGTGTAGCTTTCTACAATAATAAGCACC  454

Query  329  TA-AAAATGGCTTCCATGGCGTTCAAGATATGTATCAGAACAGTGTGGACTTGTGTTAGA  387
            || |||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct  455  TAGAAAA-GGCTTCCATGGTGTTCAAGCTATGTATTAGAACAGTGTGGACTTGTGTTAGA  513

Query  388  CTCCTCTGTCAGATATATGTAAATAAGTCTGACCTATCTGAGGATTGTCTTCCCGAAGAA  447
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  514  CTCCTCTGTCAGATATATGTAAATAAGTCTGACCTATCTGAGGATTGTCTTCCCAAAGAA  573

Query  448  GCAATTGTTGATTTCGTGAGTGAAGCATGTAGCAAATCTGCATTTTATCTGGATGTTCTC  507
            |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct  574  GCAATTATTGATTTTGTGAGTGAAGCATGTAGCAAATCTGCATTTTATCTAGATAATCTC  633

Query  508  CAGCAACATGGTGCACGAGAAATCGACAAGTTGCTTGTGTTTATTCTAGAAAATTGGTCT  567
            || ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||
Sbjct  634  CATCAACATGGTGCACGAGAAACCGAGAAGTTGCATGTGTTTATTCTAGAAAATTGGCCT  693

Query  568  GCAGCTGAAGACCTCATCAAAAAGTTGTCAGACCCTACGCCGATAATAAAACAATGGGTT  627
            | ||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||
Sbjct  694  GAAGCTGAAGACCTCATCAAAAAGTTGCCAGACCCTACACCGATAGTAAAGCAATGGGTT  753

Query  628  AAGGCCTGGTACATAAGCTTTTCTTGGGATGTGAACAAAGGTGTAG--GT--A--T--GA  679
            ||| | | |||||| |||||||||||||||||| ||||||||||||  ||  |  |  ||
Sbjct  754  AAG-C-TAGTACATGAGCTTTTCTTGGGATGTGCACAAAGGTGTAGCCGTGTAGGTATGA  811

Query  680  TCTACCTCTACCATCTT---GATGTCCCTGATATAAGTGGCATACTGTGA  726
            ||| |||| ||||| ||   ||||||||| ||||||||||||||||||||
Sbjct  812  TCTCCCTCAACCATGTTTTTGATGTCCCTCATATAAGTGGCATACTGTGA  861



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35214137047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5