BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492421
Length=2071
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24290.2 | Symbols: | MAC/Perforin domain-containing protei... 3164 0.0
> AT4G24290.2 | Symbols: | MAC/Perforin domain-containing protein
| chr4:12594282-12598028 FORWARD LENGTH=2251
Length=2251
Score = 3164 bits (1713), Expect = 0.0
Identities = 1947/2057 (95%), Gaps = 27/2057 (1%)
Strand=Plus/Plus
Query 1 TTTTGATTAACAAAACTAATTTACTGCTCCTCCATTGAGGGTTttcttctt-cttcttct 59
||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 30 TTTTGATTAACAAAACTAATTTA--------CCATTGAGGGTTTTCTTCTTCCTTCTTCT 81
Query 60 tcAACCTCCTTTGCTGCTAAGATTCAGCTCCATGTCTCTGCAATCCTAGTCCGTT-GATT 118
||| ||| ||||||||||| |||| ||||||||| ||||||||| |||| | || ||||
Sbjct 82 TCATCCT-CTTTGCTGCTATGATTGAGCTCCATGGATCTGCAATCATAGTTC-TTCGATT 139
Query 119 TAGGATTCGTTTAGATCGTGGTTTTTGAGCTCTGTTGAAGATTCTCTTGAAGACATATGC 178
|||||||||||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct 140 TAGGATTCGTTTAGATCGCGGTTTTTGAGCTCGGTTG--G-------TGAAGACATATGC 190
Query 179 TTCAAAACGTATAAGTCTTGTACTGAATCATGGCACTACGGCTACCAGCTTCTAAAGCAG 238
|| ||||| | ||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 191 TTGAAAAC--AGAAGTCTTGTACTGAAGCATGGCTCTTCGGCTACCAGCTTCTAAAGCAG 248
Query 239 CTGAAGTTGCGATTGGATCGATTGGCTGCGGTTATGATCTAGCTATTGATGTAAGGTTGA 298
||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||||||
Sbjct 249 CTGAAGTTGCGATTGGATCTATTGGCTGTGGTTATGATCTAGCTATTGATTTACGGTTGA 308
Query 299 AGTATTGCAAAGGAGGTTCTAAAGATTCTAGATTACTTGATATCAAAGAAGGTGATGACA 358
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
Sbjct 309 AGTATTGCAAAGGAGGTTCCAAAGATTCTAGATTACTTGACATTAAAGAAGGTGATGATA 368
Query 359 ATTGTGAGATTGTTTTACCTGGTGGAATCTCCATTCCTAATGTTTCCAAGTCTATTAAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 ATTGTGAGATTGTTTTACCTGGTGGAATCTCCATTCCTAATGTTTCCAAGTCTATCAAAT 428
Query 419 GCGATAAAGGGGAGCGTATGCGGTTTAGGTCCGATATTCTTCCTTTCCAACAGATGGCAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GCGATAAAGGGGAGCGTATGCGGTTTAGGTCCGATATTCTTCCTTTCCAACAGATGGCAG 488
Query 479 AGCAGTTCAACCAGGAACTATCTTTGGCTGGTAAAATCCCGTCAGGTCTCTTCAATGCGA 538
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 489 AGCAGTTCAACCAGGAACTATCTTTGGCTGGGAAAATCCCGTCAGGTCTCTTCAATGCCA 548
Query 539 TGTTTGAATTCTCGAGCTGTTGGCAGAAAGATGCAGCCTATACCAAAAACCTTGCTTTTG 598
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 549 TGTTTGAATTCTCGAGCTGTTGGCAGAAAGACGCAGCCTACACCAAAAACCTTGCTTTTG 608
Query 599 ATGGGGTATTCATCTCATTATACACGGTTGCTTTGGACAAATCTCAAGTGTTACTCCGTG 658
||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 609 ATGGGGTTTTCATCTCATTATACTCGGTGGCTTTGGACAAATCTCAAGTGTTACTCCGTG 668
Query 659 AGCATGTTAAGCAGGCTGTTCCATCAACATGGGACCCTGCTGCATTGGCAAGGTTTATAG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGCATGTTAAGCAGGCTGTTCCATCAACATGGGACCCTGCTGCATTGGCAAGGTTTATAG 728
Query 719 ATATTTATGGGACGCATATAATTGTTAGTGTGAAGATGGGAGGAAAAGATGTGATTTATG 778
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 729 ATATTTATGGGACGCATATAATTGTTAGTGTTAAGATGGGAGGAAAAGATGTGATTTATG 788
Query 779 CAAAACAACAACACTCCTCAAAACTTCAGCCTGAGGATCTGCAGAAAAGGTTAAAAGAGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CAAAACAACAACACTCCTCAAAACTTCAGCCTGAGGATCTGCAGAAAAGGTTAAAAGAGG 848
Query 839 TGGCAGATAAGAGGTTCATTGAAGCTAGCGTAGTGCATAATACGGCTTCAGAAAGAGTAC 898
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 849 TGGCAGATAAGAGGTTCGTGGAAGCTAGCGTAGTGCATAATACGGGTTCAGAAAGAGTAC 908
Query 899 ATGCAAGTAGTAAGGTGGAAACAAAGGAGCAACGCCTGAGATTTGCAGATACCAGTTCGT 958
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 909 AAGCAAGTAGTAAGGTGGAAACAAAGGAGCAACGCCTGAGATTTGCAGATACCAGTTCTT 968
Query 959 TGGGCTCTTATGCAAATAAGGAGGAC-ATTGTCTTCATGTGCAAAAGGCGAGGTGGAAAT 1017
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 969 TGGGCTCTTATGCAAATAAGGAGGACTAT-GTCTTCATGTGCAAGAGGCGAGGTGGAAAC 1027
Query 1018 GATAATAGAAATCTAATGCATAATGAATGGCTGCAAACAGTTCAGATGGAGCCTGATGTT 1077
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GATAACAGAAATCTAATGCATAATGAATGGCTGCAAACAGTTCAGATGGAGCCTGATGTT 1087
Query 1078 ATCTCAATGTCCTTTATTCCAATTACGTCTTTGCTCAATGGAGTTCCAGGAAGTGGATTC 1137
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1088 ATCTCCATGTCTTTTATTCCAATTACGTCTTTGCTTAATGGAGTTCCAGGAAGTGGATTC 1147
Query 1138 TTAAGCCATGCCATAAATCTGTATCTAAGATATAAGCCACCGATTGAAGAGCTGCATCAG 1197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1148 TTAAGCCATGCCATAAATCTGTATCTAAGATATAAGCCACCAATTGAAGAGCTGCATCAG 1207
Query 1198 TTTCTAGAGTTTCAGCTACCAAGGCAGTGGGCACCCGTGTTTAGTGAACTTCCTCTTGGT 1257
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1208 TTTCTCGAGTTTCAGCTACCAAGGCAGTGGGCACCCGTTTTTAGTGAACTTCCTCTTGGT 1267
Query 1258 CCGCAACGGAAGCAACAAAGTTGTGCATCTCTGCAATTCAGTTTCTTCGGACCTAAGCTC 1317
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1268 CCGCAACGAAAGCAACAAAGTTGTGCGTCTCTGCAATTCAGTTTCTTTGGACCTAAGCTA 1327
Query 1318 TATGTGAATACGACTCCGGTTGATGTTGGTAAGAGGCCAATCACTGGGATGCGGCTCTAC 1377
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1328 TACGTGAATACCACTCCGGTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTAC 1387
Query 1378 CTAGAGGGTAGAAGAAGCAACCGTTTGGCAATTCATTTGCAACACCTTTCCTCTCTTCCC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CTAGAGGGTAGAAGAAGCAACCGTTTGGCAATTCATTTGCAACACCTTTCCTCTCTTCCC 1447
Query 1438 AAGATATATCAGCTCGAAGACGATCTAAATAAAAGTGTCCGGCAAGAGGCGCATGATCGT 1497
||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||
Sbjct 1448 AAGATATATCAGCTCGAAGACGATCTAAATAGAAGTATCCGGCAAGAGTCTCATGACCGT 1507
Query 1498 CGATACTATGAGAAAGTAAACTGGAAGAACTACTCTCACGTCTGCACAGAACCCGTCGAA 1557
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1508 CGATACTATGAGAAAGTAAACTGGAAGAACTACTCTCACGTCTGCACAGAGCCTGTCGAA 1567
Query 1558 TCAGATGATGATCTTTCTGTAGTAACAGGTGCGCAGCTTCATGTAGAAAGCCATGGATTC 1617
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1568 TCAGATGATGATCTTTCTGTAGTAACAGGTGCGCAGCTTCATGTAGAGAGCCACGGATTC 1627
Query 1618 AAGAACGTGCTCTTCTTGCGCCTTTGTTTCTCTAGAGTTGTGGGAGCAACACTTGTAAAG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1628 AAGAACGTGCTCTTCTTGCGCCTTTGTTTCTCTAGAGTTGTGGGAGCAACACTGGTAAAG 1687
Query 1678 AATTCTGAATGGGATGAAGCGGTAGGCTTTGCTCCAAAATCAGGACTCATCTCAACGCTA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 AATTCTGAATGGGATGAAGCGGTAGGCTTTGCTCCAAAATCAGGACTCATCTCAACGCTA 1747
Query 1738 ATAAGCCATCACTTTACTGCAGCACAGAAACCACCACCAAGACCTGCAGATGTGAATATA 1797
|||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 1748 ATAAGCCATCACTTCACTGCAGCACAAAAACCACCACCACGACCTGCAGACGTGAATATA 1807
Query 1798 AACTCGGCTATCTACCCTGGCGGGCCACCAGTACCCACACAAGCTCCCAAACTTTTGAAA 1857
|| |||||||| || ||||| || |||||||||||||| |||||||| ||||||||||||
Sbjct 1808 AATTCGGCTATATATCCTGGTGGACCACCAGTACCCACGCAAGCTCCAAAACTTTTGAAA 1867
Query 1858 TTTGTGGATACAAGTGAGATGACGAGAGGACCGCAAGAATCACCCGGGTATTGGGTTGTA 1917
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1868 TTTGTGGATACAAGTGAGATGACAAGAGGGCCGCAAGAATCACCCGGGTATTGGGTTGTA 1927
Query 1918 TCAGGTGCAAGATTACTGGTGGAGAAAGGCAAAATATCATTGAAGGTGAAGTATTCTCTA 1977
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1928 TCGGGTGCAAGATTATTGGTGGAGAAAGGCAAAATCTCATTGAAGGTGAAGTATTCTCTA 1987
Query 1978 TTTACTCCAATATTGGGAGATGAAGTGAGT-GAGGAACCCTATGAATGTTAAGTGGAAAT 2036
|||||||||||||||||||||||||||| | |||||| |||||||| |||||| | ||||
Sbjct 1988 TTTACTCCAATATTGGGAGATGAAGTGA-TCGAGGAAGCCTATGAAGGTTAAGAGAAAAT 2046
Query 2037 GGTGGTTGTGTGGCTCA 2053
|||||| ||||||||||
Sbjct 2047 GGTGGTGGTGTGGCTCA 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102660114525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5