BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492424 Length=522 Score E Sequences producing significant alignments: (Bits) Value AT4G24275.1 | Symbols: | Identified as a screen for stress-res... 813 0.0 > AT4G24275.1 | Symbols: | Identified as a screen for stress-responsive genes. | chr4:12588519-12589062 FORWARD LENGTH=544 Length=544 Score = 813 bits (440), Expect = 0.0 Identities = 484/505 (96%), Gaps = 4/505 (1%) Strand=Plus/Plus Query 21 GAAGAAGAAGAAATAGAGAACAAAACATGAGTGGCTATTCCAAAATGGATTCAACAGACC 80 ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 35 GAAGAAGAAGAAAGAGAGAACAAATCATGAGTGGCTATTCCAAGATGGATTCAACAGACC 94 Query 81 AGAAGCTTGAGCCGGACCACCC--T-GTCGATCCTCAGACTCAGAAGCCCGATCTTGAAC 137 |||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 95 AGAAACTTGAGCCGGACCACCCGGTGGTCGATCCTCAGATTCAGAAGCCCGATCTTGAAC 154 Query 138 CTGTTGAAATGAAACCGAAGCTAAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG 197 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 155 CTGCTGAAATGAAACCGAAGCTGAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG 214 Query 198 TTCCTTCACCAGTGAAGATGTCTATGAGAAGATCCTCGTCTGTCTCTGAACGCTACTGTA 257 ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 215 TTCCTTCACCAATAAAGATGTCTATGAGAAGATCTTCGTCTGTCTCTGAACGCTACTGTA 274 Query 258 GAATCTATGACCAGAGCTCTGCCACGACGTGGCCTCTTCCTTTCCATGAAGGAGATGAAG 317 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 275 GAATCTATGACCAGAGCTCTGCCACGACTTGGCCGCTTCCTTTCCATGAAGGAGATGAAG 334 Query 318 ACGTCGAAGATGATGATAAAGAGAAGGTGCACAAGAAAAAGAAGAGCAACAACTTCAAGA 377 ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 335 ACGAAGATGATGATGATAAAGAGAAGGTGCACAAGAAGAAGAAGAGCAACAACTTCAAGA 394 Query 378 AAAAAGCATTCGTAAAGGCTTGTAAGCGtttttttGGGATCTCGTGAAACCAGTTTTTGT 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 AAAAAGCATTCGTAAAGGCTTGTAAGCGTTTTTTTGGGATCTCGTGAAACCAGTTTTTGT 454 Query 438 TTTCCTCTACATCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC 497 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 TT-CCTCTACCTCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC 513 Query 498 ATCTTTTTCATGAAACGTTTAATAC 522 ||||||||||||||||||||||||| Sbjct 514 ATCTTTTTCATGAAACGTTTAATAC 538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24966371059 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5