BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492424

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24275.1 | Symbols:  | Identified as a screen for stress-res...   813    0.0  


> AT4G24275.1 | Symbols:  | Identified as a screen for stress-responsive 
genes. | chr4:12588519-12589062 FORWARD LENGTH=544
Length=544

 Score =  813 bits (440),  Expect = 0.0
 Identities = 484/505 (96%), Gaps = 4/505 (1%)
 Strand=Plus/Plus

Query  21   GAAGAAGAAGAAATAGAGAACAAAACATGAGTGGCTATTCCAAAATGGATTCAACAGACC  80
            ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct  35   GAAGAAGAAGAAAGAGAGAACAAATCATGAGTGGCTATTCCAAGATGGATTCAACAGACC  94

Query  81   AGAAGCTTGAGCCGGACCACCC--T-GTCGATCCTCAGACTCAGAAGCCCGATCTTGAAC  137
            |||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||||||
Sbjct  95   AGAAACTTGAGCCGGACCACCCGGTGGTCGATCCTCAGATTCAGAAGCCCGATCTTGAAC  154

Query  138  CTGTTGAAATGAAACCGAAGCTAAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG  197
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  155  CTGCTGAAATGAAACCGAAGCTGAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG  214

Query  198  TTCCTTCACCAGTGAAGATGTCTATGAGAAGATCCTCGTCTGTCTCTGAACGCTACTGTA  257
            ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  215  TTCCTTCACCAATAAAGATGTCTATGAGAAGATCTTCGTCTGTCTCTGAACGCTACTGTA  274

Query  258  GAATCTATGACCAGAGCTCTGCCACGACGTGGCCTCTTCCTTTCCATGAAGGAGATGAAG  317
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  275  GAATCTATGACCAGAGCTCTGCCACGACTTGGCCGCTTCCTTTCCATGAAGGAGATGAAG  334

Query  318  ACGTCGAAGATGATGATAAAGAGAAGGTGCACAAGAAAAAGAAGAGCAACAACTTCAAGA  377
            |||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  335  ACGAAGATGATGATGATAAAGAGAAGGTGCACAAGAAGAAGAAGAGCAACAACTTCAAGA  394

Query  378  AAAAAGCATTCGTAAAGGCTTGTAAGCGtttttttGGGATCTCGTGAAACCAGTTTTTGT  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  395  AAAAAGCATTCGTAAAGGCTTGTAAGCGTTTTTTTGGGATCTCGTGAAACCAGTTTTTGT  454

Query  438  TTTCCTCTACATCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC  497
            || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  TT-CCTCTACCTCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC  513

Query  498  ATCTTTTTCATGAAACGTTTAATAC  522
            |||||||||||||||||||||||||
Sbjct  514  ATCTTTTTCATGAAACGTTTAATAC  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5