BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492425
Length=2548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:125... 3930 0.0
> AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:12581601-12587384
REVERSE LENGTH=2709
Length=2709
Score = 3930 bits (2128), Expect = 0.0
Identities = 2417/2555 (95%), Gaps = 26/2555 (1%)
Strand=Plus/Plus
Query 1 AAAACCCTAAACCCAAAAATCCCCAACTCGGAAACTTGAGAAAATGATGGATGATGACAC 60
||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 49 AAAACCCTAAACCCAGAAATCCCCAACTCTTAAACTTGAGAAGATGATGGCTGATGACAC 108
Query 61 TGAACTCGTCGTGAGTAGCAGC-GACCAGAAGATGGACGACGACGCTTCTA-CCCAAAAC 118
|||||||||| |||| || | |||||||||||||| | |||||||| | || |||||
Sbjct 109 TGAACTCGTC---AGTAACA-CTGACCAGAAGATGGA--A-GACGCTTC-AGCCGAAAAC 160
Query 119 CCTGCCGCTCCCCGACCTGATCCCCCCTGGTCGGATGATTCCGGCGAGTCTGATTCCGAC 178
||| | ||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 161 CCT---G---CCCGAGCTGATCCCCCCTCATCGGATGATTCCGGCGATTCTGATTCCGAC 214
Query 179 TCAGAGGATGAAGCCGAGTCGAATCAGCAGATTCAAACCCTAGAGTCGGACCTCTCCGCC 238
||||| ||||||||||||||||||||||||||| |||| | |||||||| ||||||||
Sbjct 215 TCAGAAGATGAAGCCGAGTCGAATCAGCAGATTGTAACCTTGGAGTCGGAGCTCTCCGCT 274
Query 239 AATCCTTACAACTACGATGCTTATGTCCAATACATAAAGCTTCTGAGGAAGACAGCCAAC 298
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 275 AATCCTTACAACTACGATGCTTATGTCCAATACATTAAGCTTCTCAGGAAAACAGCCAAC 334
Query 299 CTTGAAAAGCTAAGACAAGCAAGGGAAGCTATGAGTGCCATATTTCCATTGAGTCCTTCC 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 335 CTTGAAAAGCTAAGACAAGCAAGGGAAGCTATGAGTGCCATATTTCCGTTGAGTCCTTCC 394
Query 359 TTGTGGCTAGAATGGGCAAGGGATGAAGCATCTCTAGCCTCTAGTGAGAATGTGCCTCAA 418
|||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| ||
Sbjct 395 TTGTGGCTTGAATGGGCAAGGGATGAAGCGTCTTTAGCCGCTAGTGAGAATGTGCCTGAA 454
Query 419 GTTGTGATGCTTTATGAACGGGGACTTTCTGATTATCAGTCTGTATCTCTTTGGTGTGAC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 ATTGTGATGCTTTATGAACGGGGACTTTCTGATTATCAGTCTGTATCTCTTTGGTGTGAC 514
Query 479 TACCTGAGCTTTATGCTAGAATTTGATCCATCAGTACGTGGATACCCATCTGAAGGTATT 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 515 TACCTGAGCTTTATGCTAGAATTTGATCCATCAGTGCGTGGATACCCATCTGAAGGTATT 574
Query 539 TCCAAAATGCGGAGTCTTTTTGAACGTGCTATTCCGGCTGCAGGCTTCCATGTTACTGAA 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 575 TCCAAAATGCGGAGTCTTTTTGAACGTGCTATTCCGGCTGCGGGCTTCCATGTTACTGAA 634
Query 599 GGCAATAGAATATGGGAAGGTTATAGAGAATTTGAGCAAGGCGTCTTAGCCACTATCGAC 658
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 635 GGCAATAGAATATGGGAAGGATATAGAGAATTTGAGCAAGGTGTCTTAGCCACTATCGAC 694
Query 659 GAGGCTGACCTTGAGGAGAGAAATAAGCAGATACAAAGGATCAGAAGCATATTCCACCGT 718
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GAGGCTGACATTGAGGAGAGAAATAAGCAGATACAAAGGATCAGAAGCATATTCCACCGT 754
Query 719 CACTTGTCTGTTCCACTGGAAAACTTGAGCTCCACCCTTATTGCTTATAAGGCTTGGGAG 778
||| |||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 755 CACCTGTCTGTTCCTCTAGAAAACTTGAGCTCCACCCTTATTGCTTACAAGACTTGGGAG 814
Query 779 TTGGAGCAAGGCATTGACCTTGATATTGGATCTGATGATTTGAGTAAGGTTTCTCATCAA 838
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTGGAACAGGGCATTGACCTTGATATTGGATCTGATGATTTGAGTAAGGTTTCTCATCAG 874
Query 839 GTTGCTGCTGCAAACAAGAAGGCACAGCAGATGTATAGTGAGCGTGCCCATCTTGAAGAA 898
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 875 GTTGCTGTTGCAAACAAGAAGGCACAGCAGATGTATAGTGAACGTGCCCATCTTGAAGAA 934
Query 899 CACATATCTAA-CAAAGATCTATCTGACACGGAAAAGTTTCAAGAATTCATGAATTATAT 957
|||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 935 AACATATCTAAGC-AAGATTTATCTGACACGGAAAAGTTTCAGGAATTCATGAATTATAT 993
Query 958 AAAGTTTGAGAAGACTTCTGGAGATCCTACCCGAGTTCAAGCTATATATGAACGTGCTGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AAAGTTTGAGAAGACTTCTGGAGATCCTACCCGAGTTCAAGCTATATATGAACGTGCTGT 1053
Query 1018 GGCTGAATATCCGGTTTCAAGTGACTTGTGGATAGACTACACCATGTATCTTGATAAAAC 1077
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1054 GGCTGAATACCCGGTTTCAAGTGACTTGTGGATAGACTACACCGTGTATCTTGATAAAAC 1113
Query 1078 TTTGAAGGTTGGAAAAGCTATAACGCATGCCTATTCTAGGGCGACTAGAAGTTGCCCATG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1114 TTTGAAGGTTGGAAAAGCTATAACGCATGCCTATTCTAGGGCGACTAGAAGTTGTCCATG 1173
Query 1138 GATTGGAGATCTTTGGGCACGTTATTTGCTTGCTTTAGAGCGTGGTTCTGCATCTGAGAA 1197
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1174 GACTGGAGATCTTTGGGCACGTTATTTACTTGCTTTAGAGCGTGGTTCTGCATCCGAGAA 1233
Query 1198 AGAGATTTATGCTATCTTTGAGAAGTCATTGCAGTGTACATTTTCCTCCTTTGAAGAGTA 1257
||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1234 AGAGATTTATGATGTCTTTGAGAAGTCATTGCAGTGCACATTTTCCTCCTTTGAAGAGTA 1293
Query 1258 CCTGGATTTATACCTCACTCGAGTAGATGGCCTGAGAAGGAGAATGTTATCAACTAGGAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CCTGGATTTATACCTCACTCGAGTAGATGGCCTGAGAAGGAGAATGTTATCAACTAGGAT 1353
Query 1318 GGTAGAGGCTCTGGATTATTCTCTGATAAAAGAAACTTTTCAGCAAGCATCAGATTACCT 1377
| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1354 GCTAGAGGCTTTGGACTATTCTCTGATAAGAGAAACTTTTCAGCAAGCATCAGATTACCT 1413
Query 1378 AACGCCTCACATGCAAAATACAGACAGTTTGCTACATTTGCATGCTTATTGGGCTCATTT 1437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1414 AACGCCTCACATGCAAAATACAGACAGTTTGCTACATTTGCATACTTATTGGGCTAACTT 1473
Query 1438 GGAACTTAATATTGGAAAAGATCTAGCTGGAGCACGAGGTGTTTGGGATAGCTTTTTGAA 1497
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1474 GGAACTTAATATTGGAAAAGATCTAGCTGGCGCACGAGGTGTTTGGGATAGCTTTCTGAA 1533
Query 1498 GAAAAGTGGTGGGATGCTAGCAGCCTGGCATGCATACATTGATATGGAAGTGCATTTGGG 1557
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GAAGAGTGGTGGGATGCTAGCAGCCTGGCATGCATACATTGATATGGAAGTGCATTTGGG 1593
Query 1558 GCATATAAAGGAAGCTAGGTCTATTTTCCGGAGGTGCTATACAAGAAAGTTTGATGGAAC 1617
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1594 GCATATAAAGGAAGCTAGGTCTATTTACCGGAGGTGCTATACAAGAAAGTTTGATGGAAC 1653
Query 1618 TGGCTCAGAAGACATATGCAAAGGATGGTTGCGCTTTGAAAGGGAGCATGGGGATTTGGA 1677
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1654 TGGCTCAGAAGACATATGCAAAGGATGGTTGCGCTTTGAGAGGGAGCATGGGGATTTGGA 1713
Query 1678 AGGTTTTGACCTAGCAGTTCAAAAGGTTATGCCACGCTTGGAAGAGCTACAATTGATCAG 1737
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1714 ACATTTTGACCTAGCAGTTCAAAAGGTTATGCCACGCTTGGAAGAGCTACAATTGATGAG 1773
Query 1738 GTTACAACAGGAGTCTACACCAGTCAAACCGTCAGCTGGTCTGAAAGAGCATAACTCACA 1797
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1774 GTTACAACAAGAGTCTACACCAGTCAAACCGTCAGCTGGTCTGAAAGAGCATAGCTCACA 1833
Query 1798 AAAGAGAAAAGCAGAACCGAATGTAGAAGAAGAGTCTTTGGCTAAGCGGCAGAAGAGGAA 1857
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 AAAGAGAAAAGCAGAACAGAATGTAGAAGAAGAGTCTTTGGCTAAGCGGCAGAAGAGGAA 1893
Query 1858 GGGTCAAAAAGAAATGGACGTAGGTGGTCAGAGTGCAACTGTACCAAAC-ACAAAAAATG 1916
||||||||||| ||||| ||||||||||||||||||||||||| | | |||||||| |
Sbjct 1894 AAGTCAAAAAGAAGTGGACCTAGGTGGTCAGAGTGCAACTGTACC-AGCAACAAAAAACG 1952
Query 1917 TTAAAGCAGAGAATGGAAAAACAGCTGATTCAAATAAAGAAGAGACGGAAGATGCCAAAC 1976
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1953 TTAAAGCAGAGAATGGAAAAACAGCTGATTCAGATAAAGAAGAGACAGAAGATGCCAAAC 2012
Query 1977 CGCTGAAGCCGAAAATTTATACAGACGAGTGTACAGCTTTTATTTCAAATCTAAGTGTCA 2036
| |||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 2013 CACTGAAGCCGAAAGTTTATAGAGACGAGTGTACAGCTTTTATTTCGAATCTCAGTGTCA 2072
Query 2037 AGGCACAAGAGGAAGATATACGTAAGTTTTTTGGCGATGATGGTGGGGTGGATTCCATTC 2096
||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 2073 AGGCACAAGAGGAAGATATACGTAAATTCTTTGGTGATGATGGTGGGGTTGATTCCATTC 2132
Query 2097 GCATTCTCCATCACAAAGACACTGGAAAACCAAGGGGACTGGCATATGCTGATTTTGTGG 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 GCATTCTCCATCACAAAGACACTGGAAAACCAAGGGGACTGGCATATGCTGATTTTGTGG 2192
Query 2157 ATGATGAACACCTTGCAGCAGCTATAGCAAAGAACAGAAAGATATTCTTTGGTAAGAAGA 2216
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2193 ATGATGAACACCTTGCAGCAGCTATAGCAAAGAACAGAAAGATGTTTTTTGGTAAGAAGA 2252
Query 2217 TCAGTATAGCACGGTCAAATCCAAAGAAGGGTAAAAAGGAATTCACTAGGCGTGGAAATG 2276
|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2253 TCAGCATAGCACGGTCAAATCCAAAGAAGGGTAAAAAAGAATTCACTCGGCGTGGAAATG 2312
Query 2277 TAGATGGTTCAGGGAATTCAAAGGAACCCT-CCCTGATTTCTGAGAAGGCGAAAGCACCT 2335
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2313 TAGATGGTTCTGGGAATTCAAAGGA-CCCTTCCCTGATTTCTGAGAAGGCGAAAGCACCA 2371
Query 2336 CTTGGTGGAGAAA-TGGAGGATGAAAGGCAAGGAAATGAAGTCGAGGTGAGGGGTAAGAA 2394
||||||||||||| || ||| ||||||| ||||||||||||| || ||||||||||||||
Sbjct 2372 CTTGGTGGAGAAACTG-AGGGTGAAAGGAAAGGAAATGAAGTGGAAGTGAGGGGTAAGAA 2430
Query 2395 CACGTTCACTGTCCCAAGACAA-GTTAAACCACTCGGCTACACTACACCCAAACCCAGCG 2453
|||||| ||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 2431 CACGTTTGCTGTCCCAAGA-AATGTTAAACCACTCGGCTACACGACACCTAAACCCAGCG 2489
Query 2454 CAGATGAGACGCCAAAATCAAATGATGAGTTCAGGAATATGTTCCTTAAGAAGTAAGCCT 2513
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 2490 CAGATGAGACACCAAAATCAAATGATGAGTTCAGGAATATGTTCCTTAAAAAGTGAGACT 2549
Query 2514 TTTGCTTGGTCCTTATCTTCCTTCCCCTGGATACT 2548
|||||||||||| ||||||||||||| | ||||||
Sbjct 2550 TTTGCTTGGTCCCTATCTTCCTTCCCTTAGATACT 2584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126470863303
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5