BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492425 Length=2548 Score E Sequences producing significant alignments: (Bits) Value AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:125... 3930 0.0 > AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:12581601-12587384 REVERSE LENGTH=2709 Length=2709 Score = 3930 bits (2128), Expect = 0.0 Identities = 2417/2555 (95%), Gaps = 26/2555 (1%) Strand=Plus/Plus Query 1 AAAACCCTAAACCCAAAAATCCCCAACTCGGAAACTTGAGAAAATGATGGATGATGACAC 60 ||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 49 AAAACCCTAAACCCAGAAATCCCCAACTCTTAAACTTGAGAAGATGATGGCTGATGACAC 108 Query 61 TGAACTCGTCGTGAGTAGCAGC-GACCAGAAGATGGACGACGACGCTTCTA-CCCAAAAC 118 |||||||||| |||| || | |||||||||||||| | |||||||| | || ||||| Sbjct 109 TGAACTCGTC---AGTAACA-CTGACCAGAAGATGGA--A-GACGCTTC-AGCCGAAAAC 160 Query 119 CCTGCCGCTCCCCGACCTGATCCCCCCTGGTCGGATGATTCCGGCGAGTCTGATTCCGAC 178 ||| | ||||| |||||||||||| ||||||||||||||||| |||||||||||| Sbjct 161 CCT---G---CCCGAGCTGATCCCCCCTCATCGGATGATTCCGGCGATTCTGATTCCGAC 214 Query 179 TCAGAGGATGAAGCCGAGTCGAATCAGCAGATTCAAACCCTAGAGTCGGACCTCTCCGCC 238 ||||| ||||||||||||||||||||||||||| |||| | |||||||| |||||||| Sbjct 215 TCAGAAGATGAAGCCGAGTCGAATCAGCAGATTGTAACCTTGGAGTCGGAGCTCTCCGCT 274 Query 239 AATCCTTACAACTACGATGCTTATGTCCAATACATAAAGCTTCTGAGGAAGACAGCCAAC 298 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 275 AATCCTTACAACTACGATGCTTATGTCCAATACATTAAGCTTCTCAGGAAAACAGCCAAC 334 Query 299 CTTGAAAAGCTAAGACAAGCAAGGGAAGCTATGAGTGCCATATTTCCATTGAGTCCTTCC 358 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 335 CTTGAAAAGCTAAGACAAGCAAGGGAAGCTATGAGTGCCATATTTCCGTTGAGTCCTTCC 394 Query 359 TTGTGGCTAGAATGGGCAAGGGATGAAGCATCTCTAGCCTCTAGTGAGAATGTGCCTCAA 418 |||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| || Sbjct 395 TTGTGGCTTGAATGGGCAAGGGATGAAGCGTCTTTAGCCGCTAGTGAGAATGTGCCTGAA 454 Query 419 GTTGTGATGCTTTATGAACGGGGACTTTCTGATTATCAGTCTGTATCTCTTTGGTGTGAC 478 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 ATTGTGATGCTTTATGAACGGGGACTTTCTGATTATCAGTCTGTATCTCTTTGGTGTGAC 514 Query 479 TACCTGAGCTTTATGCTAGAATTTGATCCATCAGTACGTGGATACCCATCTGAAGGTATT 538 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 515 TACCTGAGCTTTATGCTAGAATTTGATCCATCAGTGCGTGGATACCCATCTGAAGGTATT 574 Query 539 TCCAAAATGCGGAGTCTTTTTGAACGTGCTATTCCGGCTGCAGGCTTCCATGTTACTGAA 598 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 575 TCCAAAATGCGGAGTCTTTTTGAACGTGCTATTCCGGCTGCGGGCTTCCATGTTACTGAA 634 Query 599 GGCAATAGAATATGGGAAGGTTATAGAGAATTTGAGCAAGGCGTCTTAGCCACTATCGAC 658 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 635 GGCAATAGAATATGGGAAGGATATAGAGAATTTGAGCAAGGTGTCTTAGCCACTATCGAC 694 Query 659 GAGGCTGACCTTGAGGAGAGAAATAAGCAGATACAAAGGATCAGAAGCATATTCCACCGT 718 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 GAGGCTGACATTGAGGAGAGAAATAAGCAGATACAAAGGATCAGAAGCATATTCCACCGT 754 Query 719 CACTTGTCTGTTCCACTGGAAAACTTGAGCTCCACCCTTATTGCTTATAAGGCTTGGGAG 778 ||| |||||||||| || ||||||||||||||||||||||||||||| ||| |||||||| Sbjct 755 CACCTGTCTGTTCCTCTAGAAAACTTGAGCTCCACCCTTATTGCTTACAAGACTTGGGAG 814 Query 779 TTGGAGCAAGGCATTGACCTTGATATTGGATCTGATGATTTGAGTAAGGTTTCTCATCAA 838 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 TTGGAACAGGGCATTGACCTTGATATTGGATCTGATGATTTGAGTAAGGTTTCTCATCAG 874 Query 839 GTTGCTGCTGCAAACAAGAAGGCACAGCAGATGTATAGTGAGCGTGCCCATCTTGAAGAA 898 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 875 GTTGCTGTTGCAAACAAGAAGGCACAGCAGATGTATAGTGAACGTGCCCATCTTGAAGAA 934 Query 899 CACATATCTAA-CAAAGATCTATCTGACACGGAAAAGTTTCAAGAATTCATGAATTATAT 957 |||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 935 AACATATCTAAGC-AAGATTTATCTGACACGGAAAAGTTTCAGGAATTCATGAATTATAT 993 Query 958 AAAGTTTGAGAAGACTTCTGGAGATCCTACCCGAGTTCAAGCTATATATGAACGTGCTGT 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 AAAGTTTGAGAAGACTTCTGGAGATCCTACCCGAGTTCAAGCTATATATGAACGTGCTGT 1053 Query 1018 GGCTGAATATCCGGTTTCAAGTGACTTGTGGATAGACTACACCATGTATCTTGATAAAAC 1077 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1054 GGCTGAATACCCGGTTTCAAGTGACTTGTGGATAGACTACACCGTGTATCTTGATAAAAC 1113 Query 1078 TTTGAAGGTTGGAAAAGCTATAACGCATGCCTATTCTAGGGCGACTAGAAGTTGCCCATG 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1114 TTTGAAGGTTGGAAAAGCTATAACGCATGCCTATTCTAGGGCGACTAGAAGTTGTCCATG 1173 Query 1138 GATTGGAGATCTTTGGGCACGTTATTTGCTTGCTTTAGAGCGTGGTTCTGCATCTGAGAA 1197 || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1174 GACTGGAGATCTTTGGGCACGTTATTTACTTGCTTTAGAGCGTGGTTCTGCATCCGAGAA 1233 Query 1198 AGAGATTTATGCTATCTTTGAGAAGTCATTGCAGTGTACATTTTCCTCCTTTGAAGAGTA 1257 ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1234 AGAGATTTATGATGTCTTTGAGAAGTCATTGCAGTGCACATTTTCCTCCTTTGAAGAGTA 1293 Query 1258 CCTGGATTTATACCTCACTCGAGTAGATGGCCTGAGAAGGAGAATGTTATCAACTAGGAT 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1294 CCTGGATTTATACCTCACTCGAGTAGATGGCCTGAGAAGGAGAATGTTATCAACTAGGAT 1353 Query 1318 GGTAGAGGCTCTGGATTATTCTCTGATAAAAGAAACTTTTCAGCAAGCATCAGATTACCT 1377 | |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1354 GCTAGAGGCTTTGGACTATTCTCTGATAAGAGAAACTTTTCAGCAAGCATCAGATTACCT 1413 Query 1378 AACGCCTCACATGCAAAATACAGACAGTTTGCTACATTTGCATGCTTATTGGGCTCATTT 1437 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || Sbjct 1414 AACGCCTCACATGCAAAATACAGACAGTTTGCTACATTTGCATACTTATTGGGCTAACTT 1473 Query 1438 GGAACTTAATATTGGAAAAGATCTAGCTGGAGCACGAGGTGTTTGGGATAGCTTTTTGAA 1497 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1474 GGAACTTAATATTGGAAAAGATCTAGCTGGCGCACGAGGTGTTTGGGATAGCTTTCTGAA 1533 Query 1498 GAAAAGTGGTGGGATGCTAGCAGCCTGGCATGCATACATTGATATGGAAGTGCATTTGGG 1557 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1534 GAAGAGTGGTGGGATGCTAGCAGCCTGGCATGCATACATTGATATGGAAGTGCATTTGGG 1593 Query 1558 GCATATAAAGGAAGCTAGGTCTATTTTCCGGAGGTGCTATACAAGAAAGTTTGATGGAAC 1617 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1594 GCATATAAAGGAAGCTAGGTCTATTTACCGGAGGTGCTATACAAGAAAGTTTGATGGAAC 1653 Query 1618 TGGCTCAGAAGACATATGCAAAGGATGGTTGCGCTTTGAAAGGGAGCATGGGGATTTGGA 1677 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1654 TGGCTCAGAAGACATATGCAAAGGATGGTTGCGCTTTGAGAGGGAGCATGGGGATTTGGA 1713 Query 1678 AGGTTTTGACCTAGCAGTTCAAAAGGTTATGCCACGCTTGGAAGAGCTACAATTGATCAG 1737 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1714 ACATTTTGACCTAGCAGTTCAAAAGGTTATGCCACGCTTGGAAGAGCTACAATTGATGAG 1773 Query 1738 GTTACAACAGGAGTCTACACCAGTCAAACCGTCAGCTGGTCTGAAAGAGCATAACTCACA 1797 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1774 GTTACAACAAGAGTCTACACCAGTCAAACCGTCAGCTGGTCTGAAAGAGCATAGCTCACA 1833 Query 1798 AAAGAGAAAAGCAGAACCGAATGTAGAAGAAGAGTCTTTGGCTAAGCGGCAGAAGAGGAA 1857 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1834 AAAGAGAAAAGCAGAACAGAATGTAGAAGAAGAGTCTTTGGCTAAGCGGCAGAAGAGGAA 1893 Query 1858 GGGTCAAAAAGAAATGGACGTAGGTGGTCAGAGTGCAACTGTACCAAAC-ACAAAAAATG 1916 ||||||||||| ||||| ||||||||||||||||||||||||| | | |||||||| | Sbjct 1894 AAGTCAAAAAGAAGTGGACCTAGGTGGTCAGAGTGCAACTGTACC-AGCAACAAAAAACG 1952 Query 1917 TTAAAGCAGAGAATGGAAAAACAGCTGATTCAAATAAAGAAGAGACGGAAGATGCCAAAC 1976 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1953 TTAAAGCAGAGAATGGAAAAACAGCTGATTCAGATAAAGAAGAGACAGAAGATGCCAAAC 2012 Query 1977 CGCTGAAGCCGAAAATTTATACAGACGAGTGTACAGCTTTTATTTCAAATCTAAGTGTCA 2036 | |||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||| Sbjct 2013 CACTGAAGCCGAAAGTTTATAGAGACGAGTGTACAGCTTTTATTTCGAATCTCAGTGTCA 2072 Query 2037 AGGCACAAGAGGAAGATATACGTAAGTTTTTTGGCGATGATGGTGGGGTGGATTCCATTC 2096 ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| Sbjct 2073 AGGCACAAGAGGAAGATATACGTAAATTCTTTGGTGATGATGGTGGGGTTGATTCCATTC 2132 Query 2097 GCATTCTCCATCACAAAGACACTGGAAAACCAAGGGGACTGGCATATGCTGATTTTGTGG 2156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2133 GCATTCTCCATCACAAAGACACTGGAAAACCAAGGGGACTGGCATATGCTGATTTTGTGG 2192 Query 2157 ATGATGAACACCTTGCAGCAGCTATAGCAAAGAACAGAAAGATATTCTTTGGTAAGAAGA 2216 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 2193 ATGATGAACACCTTGCAGCAGCTATAGCAAAGAACAGAAAGATGTTTTTTGGTAAGAAGA 2252 Query 2217 TCAGTATAGCACGGTCAAATCCAAAGAAGGGTAAAAAGGAATTCACTAGGCGTGGAAATG 2276 |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 2253 TCAGCATAGCACGGTCAAATCCAAAGAAGGGTAAAAAAGAATTCACTCGGCGTGGAAATG 2312 Query 2277 TAGATGGTTCAGGGAATTCAAAGGAACCCT-CCCTGATTTCTGAGAAGGCGAAAGCACCT 2335 |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 2313 TAGATGGTTCTGGGAATTCAAAGGA-CCCTTCCCTGATTTCTGAGAAGGCGAAAGCACCA 2371 Query 2336 CTTGGTGGAGAAA-TGGAGGATGAAAGGCAAGGAAATGAAGTCGAGGTGAGGGGTAAGAA 2394 ||||||||||||| || ||| ||||||| ||||||||||||| || |||||||||||||| Sbjct 2372 CTTGGTGGAGAAACTG-AGGGTGAAAGGAAAGGAAATGAAGTGGAAGTGAGGGGTAAGAA 2430 Query 2395 CACGTTCACTGTCCCAAGACAA-GTTAAACCACTCGGCTACACTACACCCAAACCCAGCG 2453 |||||| ||||||||||| || |||||||||||||||||||| ||||| |||||||||| Sbjct 2431 CACGTTTGCTGTCCCAAGA-AATGTTAAACCACTCGGCTACACGACACCTAAACCCAGCG 2489 Query 2454 CAGATGAGACGCCAAAATCAAATGATGAGTTCAGGAATATGTTCCTTAAGAAGTAAGCCT 2513 |||||||||| |||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 2490 CAGATGAGACACCAAAATCAAATGATGAGTTCAGGAATATGTTCCTTAAAAAGTGAGACT 2549 Query 2514 TTTGCTTGGTCCTTATCTTCCTTCCCCTGGATACT 2548 |||||||||||| ||||||||||||| | |||||| Sbjct 2550 TTTGCTTGGTCCCTATCTTCCTTCCCTTAGATACT 2584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 126470863303 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5