BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492427
Length=535
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24265.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 617 3e-176
> AT4G24265.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:12580559-12581165 REVERSE LENGTH=607
Length=607
Score = 617 bits (334), Expect = 3e-176
Identities = 498/569 (88%), Gaps = 44/569 (8%)
Strand=Plus/Plus
Query 1 GCAATGAAGAAGCTCAAGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAATGAAGAAGCTCACGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA 60
Query 61 TCTCAGCCTCACCATTGCTCTTATGAGTACTCTTCCGCGGCAGCAGCAGCGGTGTTGGTT 120
|||||||||||||||||||||| ||||||||||||| | | |||| |||||||||||||
Sbjct 61 TCTCAGCCTCACCATTGCTCTTGTGAGTACTCTTCCAC-G--GCAGTAGCGGTGTTGGTT 117
Query 121 GAGCCCACAGCGCCTCCTCTTCCTTTA-TGGTTCGATGAGAGC-CAGAGTCTTTGTCAGC 178
||||||||||||||||||||||| || ||||||||||||| | | ||||||||||| |
Sbjct 118 GAGCCCACAGCGCCTCCTCTTCC-GTATTGGTTCGATGAGA-CTCGGAGTCTTTGTCCCC 175
Query 179 CAGAGACATCAGCATTTCCTTGG------CAT-AC-T-CCTCACCAACAAGTAGAAACCA 229
||||||||||| ||||||||||| ||| || | ||||||||||||| ||||||||
Sbjct 176 CAGAGACATCATCATTTCCTTGGACTACTCATCACTTACCTCACCAACAAGAAGAAACCA 235
Query 230 TCGTTGAAGCAACCCCGTTATTGTTGTCTCAAGTGTCCGATCTTCGCATCTACCAGTCTT 289
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 236 TCGTTGAAGCAACCCCG---TTGTTGTCTCAAGTGTCTGATCTTCGCATCTACCAGTCTT 292
Query 290 ATCAACAGTACATGGTGCCGAATCCAACTAGTGACGTCCCCATTGTGGAACCAGCTACGG 349
|||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||| |
Sbjct 293 ATCAACAGTACATGGTGCCGAATCCAACTAGTAACGTCCACTTTGTAGAACCAGCTACAG 352
Query 350 CTAAGAGATCAGTGGGAATATTCGGTTGTGTTATCGAGTTAAGTTCGAGTCTAGTTCGTT 409
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 CAAAGAGATCAGTGGGAATATTCGGTTGTGTCATCGAGTTAAGTTCGAGTCTAGTTCGTT 412
Query 410 GTTTCATACCGT-----GA----TTTT--G----C------G--AGAATAATTCAACATC 446
|||||||||||| || |||| | | | ||||||||||||||||
Sbjct 413 GTTTCATACCGTAATTTGAGCAGTTTTATGGAAACCAATTTGCGAGAATAATTCAACATC 472
Query 447 TTTGA-CATGTTCCATGTATCATCTTTGCATCTTCTCAATGACATCATCATCAAGTTATG 505
||| | |||||| | ||||||||||||||||||||||||| |||| | |||| ||||| |
Sbjct 473 TTTTAACATGTTACGTGTATCATCTTTGCATCTTCTCAATTACATAAGCATCGAGTTAAG 532
Query 506 GTCATAAT-TTTCTAGAAATGTAAAATAA 533
|||||||| ||| ||||||||||||||||
Sbjct 533 GTCATAATCTTTTTAGAAATGTAAAATAA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25619414970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5