BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492432
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4... 1495 0.0
AT4G24220.1 | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fo... 99.0 1e-19
> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754
REVERSE LENGTH=1288
Length=1288
Score = 1495 bits (809), Expect = 0.0
Identities = 1169/1331 (88%), Gaps = 72/1331 (5%)
Strand=Plus/Plus
Query 49 ATGGAGTTTTTCTTCGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 108
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTTTTCTTAGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 60
Query 109 GTGGCCAAGCTGGTCTCTGTTGCCACGGTGGAGAACAGAGGAAACGGTTTGAGTTCTGAT 168
|||||||||| || |||||||| |||||||||||| | | |||||||||||||
Sbjct 61 TTGGCCAAGCTCGTTTCTGTTGCTACGGTGGAGAAC----G--A---TTTGAGTTCTGAT 111
Query 169 CAGGCGGAGAAGCACGAGATCGGCGTCGGTGATGAGTTTGTTACGGAGGAGGTTCGTTTT 228
||| || |||| ||||||| | || || | | |||||| ||||| |||||||||
Sbjct 112 CAGCCGCTCAAGCCCGAGATC-G-GT--GT--CG-G--TGTTACAGAGGATGTTCGTTTT 162
Query 229 GGTATGAAGATGGATGCTCGTGTGCTCGAAAGCGAGAGGAATTTCCAAGTTGTGGAGGAT 288
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||
Sbjct 163 GGTATGAAGATGGATGCTCGTGTTCTCGAAAGCCAGAGGAATTTCCAAGTTGTTGATGAG 222
Query 289 AATGTGGAACTTGTGGATCGGTTT-GAAAC--CGAAGCTGATCGAGTTTATGAAGTCGAA 345
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 223 AATGTGGAACTTGTCGATCGGTTTCTTAGCGAAGAAGCTGATCGAGTTTATGAAGTCGAT 282
Query 346 GAAGCTGCTACAT-TAAACGCTAAAATCCGAGGTAACCGTGAAGCTGAGTCCTCGCCTGC 404
||||||| ||| | ||||||||||||| | ||| |||||||||||||||||||| ||||
Sbjct 283 GAAGCTGTTAC-TGGAAACGCTAAAATCTGTGGTGACCGTGAAGCTGAGTCCTCGGCTGC 341
Query 405 AGTCTCGTCGGAAAATAATGTGATCGCCGAGGAGGTGA---TAGTTCGTGGACAGGACAA 461
|| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 342 AGCCTCGTCGGAAAATTATGTGATCGCCGAGGAGGTGATCTTAGTTCGAGGACAGGACGA 401
Query 462 ACAGAGCGACGAGTTGATGGTTCCAACCACGGAAGCTGAGTTCACTTCGTCAGTCTCGCC 521
|||||||||| | || | |||||||||| || ||| || ||||||||
Sbjct 402 ACAGAGCGAC----T--CGG---------CTGAAGCTGAGTCCATTTCTTCTGTCTCGCC 446
Query 522 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAACCAATAGAATTAGG 581
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 447 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAAGTAACAGAATTAGG 506
Query 582 AAGAAGTGCTTGCGTAGAAAAGGAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGA 641
|||||||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 507 AAGAAGTGGTTGCGTAGAAAACGAAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGA 566
Query 642 GGAGCTTAGGGTTGAAGAGAGTAGTGATACGGTGGAGGAGAGtgaaactgaagcagagaa 701
|||| |||| |||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 567 GGAGGTTAGAGTTGAAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAA 626
Query 702 tgaagagaagacagacttgactattgaagaagatgatgatgatgatTGGGAAGGAATTGA 761
||||||||| ||||| ||||||||| ||||| | |||||||||||||||||||||||
Sbjct 627 TGAAGAGAAAACAGAGTTGACTATT---GAAGA--A-GATGATGATTGGGAAGGAATTGA 680
Query 762 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGCAAAACTCATGGAAGAATCCGGGAA 821
||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 681 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAA 740
Query 822 AG-TGGAAGAAATTGGTGTTGAAGCTAAGATGGAGTTGTTCGGCCTTCACAAGATCGCCA 880
|| || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 741 AGCTG-AAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAAGATCGCCA 799
Query 881 CTGAAGGGTCATGTAGGGAGACACAACCTATGGCCGTCATGGTCTCTGCTCGTGCCAAAT 940
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 800 CTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCCAAAT 859
Query 941 GGAATGCCTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCCATGGAGCAGTATCTTG 1000
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 860 GGAATGCGTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTG 919
Query 1001 CACTTGTCTCAAAGGAGATCCCTGGTTTTATGAATGCTAGTTATACTGTAGGGAAGATGT 1060
|||||||||||||||| ||||||||||| | ||| ||| || ||||||||||||||||||
Sbjct 920 CACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTGTAGGGAAGATGT 979
Query 1061 CAGAAATGGAAACCGCTGTTGGCTTACCTCCTAATTCAGGATCATTAGAAGATCCGACCA 1120
|||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 980 CAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCA 1039
Query 1121 ACTTAGACACAACTGGTGTTGATGAATCCAGCAAAAATG---T--TT-CAGGAGAGAGGT 1174
|||||| |||||||||||||||||||||||||||||||| | || |||| |||||||
Sbjct 1040 ACTTAGTCACAACTGGTGTTGATGAATCCAGCAAAAATGAAATAGTTTCAGGGGAGAGGT 1099
Query 1175 GAATCCAGTGTTTAAGCAG-C----C---AAGG----CT--GGGATAACAAAGGCAAATC 1220
|||||||||| |||||||| | | |||| || |||||||||||||||||||
Sbjct 1100 GAATCCAGTGCTTAAGCAGGCAAGGCTTGAAGGAGGACTTTGGGATAACAAAGGCAAATC 1159
Query 1221 TATTCTTTTGCATATAAGTATTTTTGAAGGAGT-TGAAGGAAACCAAAACACTTAATTAT 1279
||||||||||||||||||||||||| ||| | | |||||||||||||||||| |||
Sbjct 1160 TATTCTTTTGCATATAAGTATTTTTTTAGGTGCATCT-GGAAACCAAAACACTTAAATAT 1218
Query 1280 ATGTATACATATGTGCGCGAGGATTGGTTGATTTCTAGTGCATTGATAATGCTAAGACCT 1339
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1219 ATGTATACATATGTGCGCGAGGACTGGTTGATTTCTAGTGCATTGATTATGCAAAGACCT 1278
Query 1340 TATGATTTATG 1350
||||||||||
Sbjct 1279 -ATGATTTATG 1288
> AT4G24220.1 | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold
superfamily protein | chr4:12564945-12566755 FORWARD LENGTH=1722
Length=1722
Score = 99.0 bits (53), Expect = 1e-19
Identities = 104/127 (82%), Gaps = 9/127 (7%)
Strand=Plus/Minus
Query 1528 TGCAAAACACAGAATCCGGTGTGT---TTAGGACAATACAGACTATTTCTCCTTAAGACA 1584
|||||||||||||||| ||| | | ||| | | || || || ||| |||||| |||
Sbjct 1722 TGCAAAACACAGAATCTGGTATTTCCATTA-GCCTGTAAAG-CTCTTTGTCCTTATGAC- 1666
Query 1585 AAAGCACCATTGTCCAATATCTTTCCATTACAACTTGTAACGACGATATTTGAAAAGTGA 1644
| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1665 ACTGCACCATTGTCCAATATCTTTCCATTACAACTTGTAACGA---TATTTAAAAATTGA 1609
Query 1645 AAACTAT 1651
|||||||
Sbjct 1608 AAACTAT 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5