BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492439
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24210.1 | Symbols: SLY1 | F-box family protein | chr4:12563... 881 0.0
> AT4G24210.1 | Symbols: SLY1 | F-box family protein | chr4:12563553-12564482
FORWARD LENGTH=930
Length=930
Score = 881 bits (477), Expect = 0.0
Identities = 634/705 (90%), Gaps = 30/705 (4%)
Strand=Plus/Plus
Query 1 TTTTTTCTCCATCTCTCCTCTCAAATCAAACAAC--T--CTGATCTTCGCTAATCAATTC 56
||||||||| |||||||||||||||||||||||| | |||||||||| |||| ||||
Sbjct 44 TTTTTTCTCAATCTCTCCTCTCAAATCAAACAACTTTGATTGATCTTCGC-AATCGATTC 102
Query 57 CACATGAAGCGCAGTGCTACCGACTCTGATCTGGACGGTGATGCTCATAACGAGACACAC 116
||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||| ||
Sbjct 103 CACATGAAGCGCAGTACTACCGACTCTGATTTGGCCGGTGATGCTCACAACGAGACAAAC 162
Query 117 AAGAAGATGAAGAGTACGGAGGAAGAAGATTCAGAAATCGGATTCTCCAATTTAGACGAG 176
||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 163 AAGAAGATGAAGAGTAC--A-GAGGAAGA---AGAAATCGGATTCTCCAATTTAGACGAG 216
Query 177 AATCTAGTGTACGAGGTATTGAAGCACGTAGACGCAAAGACCTTAGCTATGTCTTCTTGC 236
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 217 AATCTAGTGTACGAGGTGTTGAAACACGTCGACGCAAAGACCTTAGCTATGTCATCTTGC 276
Query 237 GTGAGCAAGATCTGGCACAAAACGGCACAAGACGAGCGGCTTTGGGAGCTGATCTGTACT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GTGAGCAAGATCTGGCACAAAACGGCACAAGACGAGCGGCTTTGGGAGCTGATCTGTACT 336
Query 297 CGTCACTGGACTAACATCGGCTGCGGCCAAAACCAGCTCAGATCTGTGGTCTTGGCCCTT 356
|||||||||||||||||||||||||| || ||||||||||||||||| || ||||| |||
Sbjct 337 CGTCACTGGACTAACATCGGCTGCGGGCAGAACCAGCTCAGATCTGTTGTGTTGGCGCTT 396
Query 357 GGTGGCTTCCGACGTCTCCACTCACTTTACCTCTGGCCTCTCTCTAAACCTAATCCGCGT 416
|||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 397 GGTGGCTTCCGAAGACTCCACTCTCTTTACCTCTGGCCTCTCTCTAAACCCAATCCGCGT 456
Query 417 GCTAGATTCGGTAAAGACGAGCTTAAACTCACTCTTTCTCTTCTCTCAATTCGATACTAT 476
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GCTAGGTTCGGTAAGGACGAGCTTAAACTCACTCTTTCTCTTCTCTCAATTCGATACTAC 516
Query 477 GAGAAGATGAGTTTCACTAAGAGACCTCTCCCA-AACTCTAATTAATT-ACTTACAAATT 534
||||||||||||||||||||||||||||| ||| || || || ||||| ||| |||||||
Sbjct 517 GAGAAGATGAGTTTCACTAAGAGACCTCTTCCAGAA-TCCAAATAATTGACT-ACAAATT 574
Query 535 CTTAGGGTTTATTTGGTTTTATCTTTTGTGTGTTTGGAGTTTGTTGATTGATAAGTGTGA 594
|||| |||| |||||| ||||||| |||||||||||||||||| ||||| |
Sbjct 575 ATTAGAGTTT----GGTTTTGGAGTTTGTGTATTTGGAGTTTGTTGATTGGTAAGTC--A 628
Query 595 CGTGATGTGATGCTCAAAGCTGGCAATAAAATTTGTTG-TATTCATA-GCCAGACTGTTA 652
| |||||||| |||| |||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 629 -G--ATGTGATGTTCAATGCTGGCAATAAAATTTGTTGGTATCCATAAGCCAGACTGTTA 685
Query 653 GCAACAGTTGTTGTTCTGTAATAATAATAGAGGCTGATGAGAATT 697
||||||||||| |||||||||||||| || || |||||||||||
Sbjct 686 GCAACAGTTGT-GTTCTGTAATAATAG-AG-GG-TGATGAGAATT 726
Score = 172 bits (93), Expect = 4e-42
Identities = 113/122 (93%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 697 TATCAAATATGATTCGATTTTGTTGTTAATTGTTGTGTCGTGAAGTTAAGTTGGTCCGTA 756
|||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 767 TATCAAATGTGATTCGATTTTGTTG-TAATGGTTCTGTCGTGAAGTTAAGTTGGTCCGTA 825
Query 757 GTTGGACAATGATTGTAACAAAATTGATTCGTGATCCAAGTT-GATAAGATTAAGAACGG 815
|||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||| |
Sbjct 826 GTTGGACAATGATTGTAACAAAATCGATTCGTGATCCA-GTTTGGTAAGATTAAGAACTG 884
Query 816 TT 817
||
Sbjct 885 TT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5