BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492443
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24180.1 | Symbols: TLP1, ATTLP1 | THAUMATIN-LIKE PROTEIN 1 ... 1291 0.0
> AT4G24180.1 | Symbols: TLP1, ATTLP1 | THAUMATIN-LIKE PROTEIN
1 | chr4:12550356-12551299 REVERSE LENGTH=861
Length=861
Score = 1291 bits (699), Expect = 0.0
Identities = 810/863 (94%), Gaps = 9/863 (1%)
Strand=Plus/Plus
Query 1 GTTTTGTGAATATTCCAAACTTGATTTCTACACAAAAAATAC-TTTGCTTTTGAA-A-AG 57
|||||||||||||||||||||| |||||| ||| |||| ||| ||| |||| || | ||
Sbjct 1 GTTTTGTGAATATTCCAAACTTAATTTCTCCACCAAAAGTACTTTTTTTTTTTAATAGAG 60
Query 58 a-a-aaaaaaaaaCAGTGATGATCATAACAGTCCTTCATTCTCCA-GTCTCATTCTATTT 114
| | ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 AGACAAAAATAAACAGTGATGATCATAACAGTCCTTCATTCT-CATGTCTCATTCTATTT 119
Query 115 CATCATCCTTAGCTTCCTCTTCTTCCATGCATTGCATTTGGTAGGAAGTGATGGTGCTAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATCATCCTTAGCTTCCTCTTCTTCCATGCATTGCATTTGGTAGGAAGTGATGGTGCTAC 179
Query 175 AATCACCATCGTAAACCGATGCAGTTTCACCGTGTGGCCGGGAATTTTGTCCAACTCCGG 234
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AATAACCATCGTAAATCGATGCAGCTTCACCGTGTGGCCGGGAATTTTGTCCAACTCCGG 239
Query 235 AAGCGGCGACATAGGCACCACCGGTTTCGAGCTCGTCCCCGGTGGTTCACGTTCGTTCCA 294
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 AAGCGGCGATATAGGCACCACCGGCTTCGAGCTCGTTCCCGGTGGTTCACGTTCGTTCCA 299
Query 295 AGCTCCAGCTAGCTGGTCAGGTCGGTTTTGGGCAAGAACCGGTTGCAACTTCAACTCGGA 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 300 AGCTCCAGCTAGCTGGTCAGGTCGGTTTTGGGCACGAACCGGTTGCAACTTCAACTCAGA 359
Query 355 CACAGGCCAAGGCACGTGCATAACCGGAGACTGCGGCTCTAACCAGGTCGAATGTAACGG 414
|||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CACAGGACAAGGCACCTGCCTAACCGGGGACTGCGGCTCTAACCAGGTCGAATGTAACGG 419
Query 415 TGCAGGAGCGAAACCTCCCGCTACGCTAGCCGAATTCACAATCGGGTCAGGTCCAGAAGA 474
||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 420 TGCAGGAGCAAAACCGCCCGCTACACTCGCCGAATTCACAATCGGGTCAGGTCCAGCAGA 479
Query 475 CCCGGCCCGTAAACAAGACTTCTACGACGTGAGCCTCGTGGATGGTTACAACGTTCCCAT 534
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 480 CCCGGCCCGTAAACAAGACTTCTACGACGTAAGCCTCGTGGACGGTTACAACGTTCCCAT 539
Query 535 GTTGGTGGAAGCAAGTGGCGGGTCAGAAGGTACTTG-TCAGACAACAGGATGTGTAACGG 593
|||||||||||||||||||||||||||||||||||| | | || || ||||| |||||||
Sbjct 540 GTTGGTGGAAGCAAGTGGCGGGTCAGAAGGTACTTGCTTA-ACCACGGGATGCGTAACGG 598
Query 594 ATCTAAACCAGAAATGTCCAACGGAGCTCCGGTTCGGATCCGGGTCAGCATGCAAGAGTG 653
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 599 ATCTAAACCAAAAATGTCCAACGGAGCTCCGGTTCGGGTCCGGGTCAGCATGCAAAAGCG 658
Query 654 CGTGTGAAGCTTTTGGTAGTCCAGAATATTGTTGTAGTGGCGCGTACGCTTCACCAACCG 713
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 659 CGTGTGAGGCTTTTGGTAGTCCAGAATATTGTTGTAGTGGCGCGTACGCCTCACCCACCG 718
Query 714 AGTGTAAACCATCGATGTACTCGGAGATATTCAAATCGGCGTGTCCAAGATCGTATAGCT 773
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 719 AGTGTAAACCATCGATGTACTCGGAGATATTCAAATCTGCGTGTCCAAGATCATATAGCT 778
Query 774 ACGCGTTCGACGATGCTACAAGTACGTTCACATGTACTGATGCTGATTACACAATCACTC 833
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 779 ACGCGTTCGACGATGCTACAAGTACGTTCACATGCACTGATGCTGATTACACCATCACTT 838
Query 834 TTTGCCCTTACTTGCCTAGGTAG 856
||||||||| |||||||||||||
Sbjct 839 TTTGCCCTTCCTTGCCTAGGTAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5