BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492444
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24175.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1483 0.0
> AT4G24175.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:12546969-12548960 FORWARD LENGTH=1120
Length=1120
Score = 1483 bits (803), Expect = 0.0
Identities = 959/1033 (93%), Gaps = 16/1033 (2%)
Strand=Plus/Plus
Query 1 TGCAATGGCGCAACTAATACGACCAATAAGGCAATTGTCGCCGCAGTGTAATCACCATTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 46 TGCAATGGCGCAACTAATACGACCAATAAGGCAATTGTCGCCGCAATGTAATCACCATTT 105
Query 61 TCGTAATCTCCGCCATTTATTTTCGAAAAAGCTTCCGAACCCACCTTCTTCTATCCCCAC 120
|||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 106 TCGTAATCTCCGGTATTTGTTTTCGAAAAAGCTACCGAACCCACCTTCTTCTATCCCCAC 165
Query 121 TCTTCTTCTCTTCTCGTCTTTCTCCACCGCAAA-GTCTCCACCTCGTCGGAGAATTCGTC 179
||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||
Sbjct 166 TCTTCTTCTCTTCTCGTCTTTCTCCACTG-AAAGGTCTCCACCTCGTCGGCGAATTCGTC 224
Query 180 CCGCGCCACCGGAAGCTTTAACTCCAACTGTTA---TTGCTGAAGACGATGGTGATAGCG 236
||||||||||||||||||||| || ||||||| |||| ||||| |||||||||| ||
Sbjct 225 CCGCGCCACCGGAAGCTTTAAAGCCTACTGTTATTGTTGCCGAAGAAGATGGTGATAACG 284
Query 237 ATGGCTCCGAGTCTGACTCGTTGAAGAGCCGTAACCAGCGGAAGCGTGATGCTCGCCGTG 296
|||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 285 ATGGTTACGAGTCTGATTCGTTGAGGAGTCGTAACCAGCGGAAGCGTGATGCTCGCCGTG 344
Query 297 CCGTCAAATGGGGTATGGAACTTGCTTCCTTCTCCGGTGATCAGGTTAAACGGATTCTGA 356
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 345 CCGTTAAATGGGGTATGGAACTTGCTTCCTTCTCCGGTGATCAGGTTAAGCAGATTCTGA 404
Query 357 AAGCGGCGTCACTTGGTGAAGAGGTTTATGATGCGTTGATGCTTGCGAAGAGACTAGGCT 416
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 405 AAGCTGCGTCGCTTGGTGAAGAGGTTTATGATGCATTGATGCTTGCGAAGAGACTAGGCT 464
Query 417 CAGATGTTCGAGAAGGAAAGCGTAGACATTTCAATTATATTGGGAAATTGTTGCGTGAAG 476
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 465 CGGATGTTCGAGAAGGAAAGCGTAGACATTTCAACTATATTGGGAAATTGTTGCGTGAAG 524
Query 477 TTGAACCTGATTTGATGGACACTCTGATTAATGCCACGAAGCAGGGGGATCACACAACGC 536
|||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||
Sbjct 525 TTGAACCTGATTTGATGGACACTCTGATTAATGCTACAAAGCAGGGTGATCACTCAACGC 584
Query 537 TGCAGACACTGATTAGTTCAGCGAAGGATGTCGCTGTTGATGTTGGAGGCAGCTATGATG 596
||||||| |||||||||||||| ||||||||||| | ||||||||||| ||| |||||||
Sbjct 585 TGCAGACGCTGATTAGTTCAGCAAAGGATGTCGCAGATGATGTTGGAGACAGTTATGATG 644
Query 597 ATGATACAGAAACAGAGTCAGAAGATGGAGAGGAGGGGTCAGACGAATATATACCTATGG 656
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 645 ATGATACAGAAACAGAGTCAGAAGATGAAGAGGAGGGGTCTGACGAATATACGGCTATGG 704
Query 657 CTGCGAGGTGGTTTGATGGCCTAATCAGTCAAAATGTGGAACTTACAAAGGAAGTGTATT 716
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 705 CTGCGAGATGGTTTGATGGCCTAATCAGTCAAAATGTGGAACTTACAAAGGAGGTTTATT 764
Query 717 CTCTTCAGAGTGTTGATTTCGATAGACAGGAATTGCGTAAACTTGTTCGGAAAGTACAGT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTCTTCAGAGTGTTGATTTCGATAGACAGGAATTGCGTAAACTTGTTCGGAAAGTACAGT 824
Query 777 TGGTTCATGAGCAAAGAAAAGGCACAACAGAGGAGAAGCAGAAAGAAGTTGAGGCTGCAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGGTTCATGAGCAAAGAAAAGGCACAACAGAGGAGAAGCAGAAAGAAGTTGAGGCTGCAT 884
Query 837 TAGTGACCGCTGAAAATTCTCTGAAACAATTCCTCTGTTCCATGGCGAAACAAATGCAGA 896
||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |||| |
Sbjct 885 TAGTGACTGCTGAAAAGTCTCTGAATCAATTCCTCTGCTCCATGGCGAAACAAGTGCACA 944
Query 897 GTGAGCAGACTGAGTTGTACTTATGAATAACAATGCGTTCTTGACTCTAC-ATTT-TCTT 954
||||||||||||| |||||||||||||| | |||| |||||||||||| | |||| | ||
Sbjct 945 GTGAGCAGACTGATTTGTACTTATGAATGATAATGTGTTCTTGACTCT-CTATTTGTTTT 1003
Query 955 TTATC-A-A--A-A-CTCCATTCTTTCCCCAGAGACATCCCAAGGACCATAGTTTTTTAG 1008
|||| | | | | |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1004 TTATATATATCAGAACTCCATTCTTTCCCCAGA--CATCCAAAGGACCATAGTTTTTTAG 1061
Query 1009 GCGAATGTTGTTA 1021
| |||||||||||
Sbjct 1062 GTGAATGTTGTTA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5