BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492449
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24140.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2874 0.0
> AT4G24140.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:12529875-12533842 REVERSE LENGTH=1832
Length=1832
Score = 2874 bits (1556), Expect = 0.0
Identities = 1745/1834 (95%), Gaps = 22/1834 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTATTCTCAACTCTCAAATagagagagaaaaggagacagacagagagagGTTCTA 60
|||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 4 ATCTCCTAGTCTCAACTCTCAAATAGAGAGAGAAAAACAGAAAGACAGAGAGAGGTTCTA 63
Query 61 TATATTAT--ATAAAGTACATTACACAATTGTACAGGTGG-ACAATCCATCACGGATCTC 117
|||||||| ||||||||||||||||||||||||| |||| | ||| ||||||||| ||
Sbjct 64 TATATTATAGATAAAGTACATTACACAATTGTACAAGTGGAAAAAT-CATCACGGA--TC 120
Query 118 TCTTCATATATCTCAAATATATAAAGAAGATTTGTGTATTAAACTCTCTAAGC-TTTGTT 176
|| || | ||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 121 TC-TC-----T-TCAAATATATAAAGAAGATTTGTATATCAAACTCTCTAAGCTTTTGTT 173
Query 177 GAGCCATGGCTGTGATGAAGATAAGAGGAGCAGCGACCGTAGCAGGAACATGGCTAAACG 236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 174 GAGCCATGGCTGTGATGAAGATAAAAGGAGCAGCGACCGTAGCAGGAACATGGCTGAACG 233
Query 237 AAGCCGTTAGCTTCGTCGTGTTCTGTGTCTTAGACATCGTTGATTCATTTCTTTGTCTCC 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 234 AAGCCGTTAGCTTCGTCGTGTTCTGTATCTTAGACATCGTTGATTCATTTCTTTGTCTCC 293
Query 297 TCTACAAAGCAGCTGACTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCTACAAAGCAGCTGATTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 353
Query 357 ACAAGGAACCCATCACGACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAAT 416
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 354 ACAAGGAACCCATCACCACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAGT 413
Query 417 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGTGGACGTTCCAAGATTGAACTGG 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 414 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGCGGACGTTCCAAGATTGAGCTGG 473
Query 477 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTACCGACCTCTCTAA-CATC 535
||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||
Sbjct 474 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTTCCGACATCTC-AACCATC 532
Query 536 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCGGAATCCGAGTGTAGC 595
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 533 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCAGAGTCTGAGTGTAGC 592
Query 596 GGCCATCATGAGAAGACCAAGAACAAAAGGAGGAGATCAGTAATGAAGTCAAGTTTGACG 655
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 593 GGCCATAATGAGAAGACCAAGAACAAAAGGAGGAGATCATTAACGAAGTCAAGCTTGACG 652
Query 656 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCACAGAATTTGAGCCAC 715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 653 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCGCAGAATTTGAACCAC 712
Query 716 GATATCTCCCGATGGTCGGATTGTGATTGTGGCTTTTGTACATCGTGGGCCTCTACTTCC 775
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 713 GATATCTCTCGATGGTCGGATTGTGATTGTGGGTTTTGTACATCGTGGGCCTCTACTTCT 772
Query 776 GACAAAGATCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTGACAGCCAAAGAG 835
|||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 773 GACAAAAACCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTAACAGCGAAAGAG 832
Query 836 GATGTTCTGTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACAGTGTTT 895
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 GATGTTCTTTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACGGTGTTT 892
Query 896 CCAAGCCTGTCAGCTTCCTCATCGGCTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 955
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 893 CCAAGCCTGTCAGCCTCCTCCTCGACTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 952
Query 956 GGCAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGGGAACACGTAGATATGATC 1015
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 953 GGAAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGAGAACACGTAGAGATGATC 1012
Query 1016 GAGAAATCTGTCTTACACAAACACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1075
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GAGAAATCTGTCTTACACAAATACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1072
Query 1076 GGATGCATTTTGGCTCTTAGTCTCGCCGCTAGACACGGCAGCTTAATCAAGTCGCTTACC 1135
|||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||
Sbjct 1073 GGATGCATTTTGGCGCTTAGCCTAGCCGCTAGACATGGCGGCTTAATCAAGTCGCTTACC 1132
Query 1136 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGACGAAA-CCGAGGCAGTACGT 1194
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1133 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGA-AAAAGCCGAGGCAGTACGT 1191
Query 1195 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCGCCAATAGCTCTAGGAGCGTCGATGGC 1254
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1192 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCACCAATAGCTCTCGGAGCGTCGATGGC 1251
Query 1255 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1311
Query 1315 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAATAACAGGACTGTAAACTTTTTAATAGA 1374
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1312 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAACAACAGGACTGTAAACTTTTTAATTGA 1371
Query 1375 AGGTTTCATGTGTCACACGCACAACGCAGCGTGGCACACTCTACACAACATTATATGTGG 1434
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1372 AGGTTTCATGTGTCACACACACAACGCAGCATGGCATACTCTACATAACATTATATGTGG 1431
Query 1435 GACAGGAAGTAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1494
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GACAGGAAGCAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1491
Query 1495 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1551
Query 1555 AGAGCGGATTCCTCGAGCACGAGTTAAGGTTATTGAGCACAAAGACCATATCACCATGGT 1614
| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1552 ACAGCGAATTCCTCGGGCACGAGTTAAGGTTATTGAGCACAAAGATCATATCACTATGGT 1611
Query 1615 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1671
Query 1675 CTAAGATTATGTTTGATGAGAG--CTTGTGATTTATTATGATTGTTCTATGTAATGAGTT 1732
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1672 CTAAAATTATGTTTGATGAGAGAACTTGTGATTTATTATGATTGTTCTATGTAATGGGTT 1731
Query 1733 GGTAAAAATATTCTTATA-AGTTTTATCATTACAAATTAAGGAAATCCTTATGTATCATG 1791
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1732 GGTAAAAATATTCTTA-AGAGTTTTATAATTACAAATTAAGGAAATCCTTATGTATCATG 1790
Query 1792 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1825
||||||||||||||||||||||||||||||||||
Sbjct 1791 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5